Add yamanifest to 25.02

Author: rbeucher

environments/analysis3/config.sh

@@ -8,16 +8,16 @@
 ### outside_files_to_copy
 
 ### Optional config for custom deploy script
-export VERSION_TO_MODIFY=25.02e
+export VERSION_TO_MODIFY=25.02
 export STABLE_VERSION=24.12
-export UNSTABLE_VERSION=25.02e
+export UNSTABLE_VERSION=25.02
 
 ### Version settings
 export ENVIRONMENT=analysis3
 export FULLENV="${ENVIRONMENT}-${VERSION_TO_MODIFY}"
 
 declare -a rpms_to_remove=( "openssh-clients" "openssh-server" "openssh" )
-declare -a replace_from_apps=( "ucx/1.15.0" openmpi/5.9.5)
+declare -a replace_from_apps=( "ucx/1.15.0" )
 declare -a outside_commands_to_include=( "pbs_tmrsh" "ssh" )
-#declare -a outside_files_to_copy=( "/g/data/xp65/public/apps/openmpi/4.1.6" )
-#declare -a replace_with_external=( "/g/data/xp65/public/apps/openmpi/4.1.6" )
+declare -a outside_files_to_copy=( "/g/data/xp65/public/apps/openmpi/4.1.6" )
+declare -a replace_with_external=( "/g/data/xp65/public/apps/openmpi/4.1.6" )

environments/analysis3/environment.yml

@@ -1,12 +1,11 @@
-name: analysis3-edge
+name: analysis3
 channels:
 - conda-forge
 - nodefaults
 dependencies:
-# SPEC0 packages
 - python==3.11.*
 - dask==2025.1.*
-- numpy==2.2.*
+- numpy==1.26.*
 - scipy==1.15.*
 - matplotlib==3.10.*
 - pandas==2.2.*
@@ -18,26 +17,13 @@ dependencies:
 - iris==3.11.*
 - netcdf4==1.7.*
 - libnetcdf=*=mpi_openmpi*
-- openmpi==5.0.5
+- openmpi==4.1.6
 - pip=25.*
-- hdf5=1.14.*=mpi_openmpi*
+- hdf5=1.14.*=mpi_openmpi* # issues with version 1.14.3, version 1.14.4 not available for openmpi < 5.0
 - jupyterlab==4.3.*
 - cmor==3.9.*
 - accessnri::access-nri-intake==1.1.*
 - conda-forge::intake-dataframe-catalog==0.3.1
-# - numba needs numpy < 2.0
-#- dask-ml Causing issue for some reasons
-#- datashader requires numpy <2.0
-#- geocat-comp issue with numpy <2. and probably python 3.11
-#- geocat-comp requires numba and numpy < 2.0
-#- icclim requires numba
-#- neutralocean needs numpy < 2.0
-#- regional-mom6 needs numpy <2
-#- tensorflow
-#- u8darts-all requires numba
-#- wavespectra, needs numpy <2
-#- wrf-python needs numpy <2
-#- xarray-spatial needs numpy <2.
 - aiohttp
 - aiohttp-cors
 - ants
@@ -74,9 +60,11 @@ dependencies:
 - cvxpy
 - dask-jobqueue
 - dask-labextension
+- dask-ml
 - dask-xgboost
 - dataclasses-json
 - dataset
+- datashader
 - descartes
 - distributed
 - doc8
@@ -89,6 +77,7 @@ dependencies:
 - erddapy
 - esmf
 - esmpy
+- esmvalcore
 - f90nml
 - ffmpeg
 - filelock
@@ -99,6 +88,7 @@ dependencies:
 - fs
 - gcc_linux-64
 - gcm_filters
+- geocat-comp
 - geocat-viz
 - geoplot
 - geopy
@@ -110,6 +100,7 @@ dependencies:
 - httpx
 - hupper
 - hvplot
+- icclim
 - intake
 - intake-esm==2025.2.3
 - ipdb
@@ -146,9 +137,11 @@ dependencies:
 - nc-time-axis
 - ncdu
 - nctoolkit
+- neutralocean
 - ninja
 - nodejs
 - notebook
+- numba
 - numexpr
 - odc-geo
 - opencv
@@ -180,6 +173,7 @@ dependencies:
 - rasterio
 - rasterstats
 - rechunker
+- regional-mom6
 - regionmask
 - rioxarray
 - ruff
@@ -194,17 +188,22 @@ dependencies:
 - sqlalchemy
 - statsmodels
 - sympy
+- tensorflow
 - timezonefinder
 - tintx
 - tqdm
 - twine
+- u8darts-all
 - ujson
 - vtk
 - watchdog
 - watermark
+- wavespectra
 - webcolors
 - windspharm
 - wradlib
+- wrf-python
+- xarray-spatial
 - xarraymannkendall
 - xcdat
 - xclim
@@ -217,3 +216,4 @@ dependencies:
 - xrft
 - xskillscore
 - xwrf
+- yamanifest