Add install/setup script for ARE on gadi (needs testing)

Author: OKaluza

README.md

@@ -6,3 +6,6 @@ This repository is intended as a resource for complex visualisation tasks using
 What this space for published source code for our released visualisations which will be added here as soon as tested and ready for public release.
 
 Included the python module 'accessvis' which can be installed from here with `python -m pip install --editable .`
+
+See also the included `install.sh` to set up the jupyter kernels for running in ARE on gadi.
+

install.sh

@@ -0,0 +1,24 @@
+#!/bin/bash
+if [[ $HOSTNAME == *"gadi.nci.org.au"* ]]; then
+  echo "Setting up for user on gadi..."
+  cd /g/data/nf33/public/data/accessvis/
+  module use /g/data/hh5/public/modules
+  module load conda/analysis3
+
+  #Install kernels for GPU and CPU rendering
+
+  source vis_venv/bin/activate
+  python3 -m ipykernel install --user --name vis-venv --display-name "Visualisation + conda/analysis3"
+  deactivate
+
+  #For CPU visenv
+  source vis_venv_nogpu/bin/activate
+  python3 -m ipykernel install --user --name vis-venv-nogpu --display-name "Visualisation no GPU + conda/analysis3"
+  deactivate
+
+else
+  echo "Installing locally..."
+  python -m pip install --editable .
+fi
+
+