Merge pull request #38 from ACCESS-NRI/37-update-input-paths-pre-industrial

37 update input paths pre-industrial

Author: blimlim

atmosphere/cable.nml

@@ -1,7 +1,7 @@
 &cable
 !
- filename%veg     = 'INPUT/CABLE-AUX-1.4/core/biogeophys/def_veg_params.txt' !relative to your home dir
- filename%soil    = 'INPUT/CABLE-AUX-1.4/core/biogeophys/def_soil_params.txt' !relative to your home dir
+ filename%veg     = 'INPUT/def_veg_params.txt'
+ filename%soil    = 'INPUT/def_soil_params.txt'
 !
 !
 !! cable_user flags
@@ -53,7 +53,6 @@
   l_laiFeedbk   = .TRUE.  ! using prognostic LAI
   l_vcmaxFeedbk = .TRUE.  ! using prognostic Vcmax
 ! filenames for CASA-CNP input files
-!  casafile%cnpbiome='INPUT/CABLE-AUX-1.4/core/biogeochem/pftlookup_csiro_v16_17tiles.csv' ! biome specific BGC parameters
-  casafile%cnpbiome='INPUT/CABLE-AUX-1.4/core/biogeochem/pftlookup_csiro_v16_17tiles_wtlnds.csv'  ! biome specific BGC parameters
-  casafile%phen='INPUT/CABLE-AUX-1.4/core/biogeochem/modis_phenology_csiro.txt' ! phenology by latitude (modis derived)
+  casafile%cnpbiome='INPUT/pftlookup_csiro_v16_17tiles_wtlnds.csv'  ! biome specific BGC parameters
+  casafile%phen='INPUT/modis_phenology_csiro.txt' ! phenology by latitude (modis derived)
 &end

config.yaml

@@ -2,9 +2,10 @@ jobname: pre-industrial
 queue: normal
 walltime: 2:00:00
 
+# Modules for loading model executables
 modules:
   use:
-      - /g/data/vk83/apps/spack/0.22/release/modules/linux-rocky8-x86_64_v4
+      - /g/data/vk83/modules/access-models/
   load:
       - access-esm1p5/2024.05.0
 
@@ -18,36 +19,88 @@ submodels:
       ncpus: 192
       exe: um_hg3.exe
       input:
-        - /g/data/access/payu/access-esm/input/pre-industrial/atmosphere
+        # Aerosols
+        - /g/data/vk83/configurations/inputs/access-esm1p5/modern/pre-industrial/atmosphere/aerosol/global.N96/2020.05.19/OCFF_1850_ESM1.anc
+        - /g/data/vk83/configurations/inputs/access-esm1p5/modern/pre-industrial/atmosphere/aerosol/global.N96/2020.05.19/BC_hi_1850_ESM1.anc
+        - /g/data/vk83/configurations/inputs/access-esm1p5/modern/pre-industrial/atmosphere/aerosol/global.N96/2020.05.19/scycl_1850_ESM1_v4.anc
+        - /g/data/vk83/configurations/inputs/access-esm1p5/modern/pre-industrial/atmosphere/aerosol/global.N96/2020.05.19/Bio_1850_ESM1.anc
+        - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/atmosphere/aerosol/global.N96/2020.05.19/biogenic_351sm.N96L38
+        - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/atmosphere/aerosol/global.N96/2020.05.19/sulpc_oxidants_N96_L38
+        - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/atmosphere/aerosol/global.N96/2020.05.19/DMS_conc.N96
+        # Forcing
+        - /g/data/vk83/configurations/inputs/access-esm1p5/modern/pre-industrial/atmosphere/forcing/global.N96/2020.05.19/ozone_1850_ESM1.anc
+        - /g/data/vk83/configurations/inputs/access-esm1p5/modern/pre-industrial/atmosphere/forcing/resolution_independent/2020.05.19/volcts_18502000ave.dat
+        # Land
+        - /g/data/vk83/configurations/inputs/access-esm1p5/modern/pre-industrial/atmosphere/land/biogeochemistry/global.N96/2020.05.19/Ndep_1850_ESM1.anc
+        - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/atmosphere/land/soiltype/global.N96/2020.05.19/qrparm.soil_igbp_vg
+        - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/atmosphere/land/vegetation/global.N96/2020.05.19/cable_vegfunc_N96.anc
+        - /g/data/vk83/configurations/inputs/access-esm1p5/share/atmosphere/land/biogeochemistry/resolution_independent/2020.05.19/modis_phenology_csiro.txt
+        - /g/data/vk83/configurations/inputs/access-esm1p5/share/atmosphere/land/biogeochemistry/resolution_independent/2020.05.19/pftlookup_csiro_v16_17tiles_wtlnds.csv
+        - /g/data/vk83/configurations/inputs/access-esm1p5/share/atmosphere/land/biogeophysics/resolution_independent/2020.05.19/def_soil_params.txt
+        - /g/data/vk83/configurations/inputs/access-esm1p5/share/atmosphere/land/biogeophysics/resolution_independent/2020.05.19/def_veg_params.txt
+        # Spectral
+        - /g/data/vk83/configurations/inputs/access-esm1p5/share/atmosphere/spectral/resolution_independent/2020.05.19/spec3a_sw_hadgem1_6on
+        - /g/data/vk83/configurations/inputs/access-esm1p5/share/atmosphere/spectral/resolution_independent/2020.05.19/spec3a_lw_hadgem1_6on
+        # Grids
+        - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/atmosphere/grids/global.N96/2020.05.19/qrparm.mask
+        - /g/data/vk83/configurations/inputs/access-esm1p5/share/atmosphere/grids/resolution_independent/2020.05.19/vertlevs_G3
+        # STASH
+        - /g/data/vk83/configurations/inputs/access-esm1p5/share/atmosphere/stash/2020.05.19/
 
     - name: ocean
       model: mom
       ncpus: 180
       exe: fms_ACCESS-CM.x
       input:
-        - /g/data/access/payu/access-esm/input/pre-industrial/ocean/common
-        - /g/data/access/payu/access-esm/input/pre-industrial/ocean/pre-industrial
-
+        # Biogeochemistry
+        - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/ocean/biogeochemistry/global.1deg/2020.05.19/dust.nc
+        - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/ocean/biogeochemistry/global.1deg/2020.05.19/ocmip2_press_monthly_om1p5_bc.nc
+        - /g/data/vk83/configurations/inputs/access-esm1p5/share/ocean/biogeochemistry/global.1deg/2024.07.12/bgc_param.nc
+        - /g/data/vk83/configurations/inputs/access-esm1p5/modern/unused/ocean/biogeochemistry/global.1deg/2020.05.19/ocmip2_fice_monthly_om1p5_bc.nc
+        - /g/data/vk83/configurations/inputs/access-esm1p5/modern/unused/ocean/biogeochemistry/global.1deg/2020.05.19/ocmip2_xkw_monthly_om1p5_bc.nc
+        # Tides
+        - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/ocean/tides/global.1deg/2020.05.19/roughness_amp.nc
+        - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/ocean/tides/global.1deg/2020.05.19/tideamp.nc
+        # Shortwave
+        - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/ocean/shortwave_penetration/global.1deg/2020.05.19/ssw_atten_depth.nc
+        # Grids
+        - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/ocean/grids/mosaic/global.1deg/2020.05.19/grid_spec.nc
+        
     - name: ice
       model: cice
       ncpus: 12
       exe: cice_access_360x300_12x1_12p.exe
       input:
-        - /g/data/access/payu/access-esm/input/pre-industrial/ice
+        # Grids
+        - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/ice/grids/global.1deg/2020.05.19/kmt.nc
+        - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/ice/grids/global.1deg/2020.05.19/grid.nc
+        # Climatology
+        - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/ice/climatology/global.1deg/2020.05.19/monthly_sstsss.nc
 
     - name: coupler
       model: oasis
       ncpus: 0
       input:
-        - /g/data/access/payu/access-esm/input/pre-industrial/coupler
+        # Grids
+        - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/coupler/grids/global.oi_1deg.a_N96/2020.05.19/grids.nc
+        - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/coupler/grids/global.oi_1deg.a_N96/2020.05.19/areas.nc
+        - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/coupler/grids/global.oi_1deg.a_N96/2020.05.19/masks.nc
+        # Remapping weights
+        - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/coupler/remapping_weights/global.oi_1deg.a_N96/2020.05.19/rmp_cice_to_um1t_CONSERV_FRACNNEI.nc
+        - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/coupler/remapping_weights/global.oi_1deg.a_N96/2020.05.19/rmp_um1u_to_cice_CONSERV_FRACNNEI.nc
+        - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/coupler/remapping_weights/global.oi_1deg.a_N96/2020.05.19/rmp_um1t_to_cice_CONSERV_DESTAREA.nc
+        - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/coupler/remapping_weights/global.oi_1deg.a_N96/2020.05.19/rmp_cice_to_um1u_CONSERV_FRACNNEI.nc
+        - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/coupler/remapping_weights/global.oi_1deg.a_N96/2020.05.19/rmp_um1v_to_cice_CONSERV_FRACNNEI.nc
+        - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/coupler/remapping_weights/global.oi_1deg.a_N96/2020.05.19/rmp_um1t_to_cice_CONSERV_FRACNNEI.nc
+        - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/coupler/remapping_weights/global.oi_1deg.a_N96/2020.05.19/rmp_cice_to_um1v_CONSERV_FRACNNEI.nc
 
 collate:
     exe: mppnccombine.spack
     restart: true
     mem: 4GB
     walltime: 1:00:00
 
-restart: /g/data/vk83/experiments/inputs/access-esm1p5/pre-industrial/restart/
+restart: /g/data/vk83/configurations/inputs/access-esm1p5/modern/pre-industrial/restart/
 
 calendar:
     start: