Merge pull request #121 from ACCESS-NRI/dev-preindustrial+concentrations

Changes for ESM1.5 pre-industrial minor release 1.2

Author: blimlim

atmosphere/diagnostic_profiles/STASHC_spinup_concentrations

@@ -10,9 +10,9 @@ RPSEED: ''
 RUNID: PI-01
 TYPE: NRUN
 UM_ATM_NPROCX: '16'
-UM_ATM_NPROCY: '12'
+UM_ATM_NPROCY: '15'
 UM_NAM_MAX_SECONDS: '300'
-UM_NPES: '192'
+UM_NPES: '240'
 UM_SECTOR_SIZE: '2048'
 UM_STDOUT_FILE: atm.fort6.pe
 VN: '7.3'

atmosphere/um_env.yaml

@@ -26,15 +26,15 @@ modules:
   use:
       - /g/data/vk83/modules
   load:
-      - access-esm1p5/2024.05.1
+      - access-esm1p5/2024.12.0
 
 # Model configuration
 model: access
 
 submodels:
     - name: atmosphere
       model: um
-      ncpus: 192
+      ncpus: 240
       exe: um_hg3.exe
       input:
         # Aerosols
@@ -63,7 +63,7 @@ submodels:
         - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/atmosphere/grids/global.N96/2020.05.19/qrparm.mask
         - /g/data/vk83/configurations/inputs/access-esm1p5/share/atmosphere/grids/resolution_independent/2020.05.19/vertlevs_G3
         # STASH
-        - /g/data/vk83/configurations/inputs/access-esm1p5/share/atmosphere/stash/2020.05.19/
+        - /g/data/vk83/configurations/inputs/access-esm1p5/share/atmosphere/stash/2024.11.01
 
     - name: ocean
       model: mom
@@ -81,6 +81,8 @@ submodels:
         - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/ocean/shortwave_penetration/global.1deg/2020.05.19/ssw_atten_depth.nc
         # Grids
         - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/ocean/grids/mosaic/global.1deg/2020.05.19/grid_spec.nc
+        # Basin mask
+        - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/ocean/basins/global.1deg/2020.05.19/basin_mask.nc
 
     - name: ice
       model: cice
@@ -142,7 +144,7 @@ manifest:
   reproduce:
     exe: True
 
-
+payu_minimum_version: 1.1.6
 stacksize: unlimited
 qsub_flags: -W umask=027
 

config.yaml

@@ -0,0 +1,126 @@
+&setup_nml
+  , histfreq       = 'd','m','x','x','x'
+  , histfreq_n     = 1, 1, 1, 1, 1
+  , hist_avg       = .true.
+/
+
+! Please note, the following diagnostics are affected by
+! issues in ACCESS ESM1.5 and have been disabled from the output:
+! fsalt_ai, daidtd, daidtt, dvidtd, congel, frazil, meltl, meltb,
+! meltt, snoice, dvidtt, fswthru_ai, Tsfc.
+
+&icefields_nml
+    f_tmask        = .true.
+  , f_tarea        = .true.
+  , f_uarea        = .true.
+  , f_dxt          = .false.
+  , f_dyt          = .false.
+  , f_dxu          = .false.
+  , f_dyu          = .false.
+  , f_HTN          = .false.
+  , f_HTE          = .false.
+  , f_ANGLE        = .true.
+  , f_ANGLET       = .true.
+  , f_NCAT         = .true.
+  , f_VGRDi        = .true.
+  , f_VGRDs        = .true.
+  , f_bounds       = .false.
+  , f_hi           = 'm'
+  , f_hs           = 'x' 
+  , f_Tsfc         = 'x' 
+  , f_aice         = 'm' 
+  , f_uvel         = 'm' 
+  , f_vvel         = 'm' 
+  , f_fswdn        = 'x' 
+  , f_flwdn        = 'x'
+  , f_snow         = 'x' 
+  , f_snow_ai      = 'x' 
+  , f_rain         = 'x' 
+  , f_rain_ai      = 'x' 
+  , f_sst          = 'x' 
+  , f_sss          = 'x' 
+  , f_uocn         = 'x' 
+  , f_vocn         = 'x' 
+  , f_frzmlt       = 'x'
+  , f_fswfac       = 'x'
+  , f_fswabs       = 'x' 
+  , f_fswabs_ai    = 'x' 
+  , f_albsni       = 'x' 
+  , f_alvdr        = 'x'
+  , f_alidr        = 'x'
+  , f_albice       = 'x'
+  , f_albsno       = 'x'
+  , f_albpnd       = 'x'
+  , f_coszen       = 'x'
+  , f_flat         = 'x' 
+  , f_flat_ai      = 'x' 
+  , f_fsens        = 'x' 
+  , f_fsens_ai     = 'x' 
+  , f_flwup        = 'x' 
+  , f_flwup_ai     = 'x' 
+  , f_evap         = 'x' 
+  , f_evap_ai      = 'x' 
+  , f_Tair         = 'x' 
+  , f_Tref         = 'x' 
+  , f_Qref         = 'x'
+  , f_congel       = 'x' 
+  , f_frazil       = 'x' 
+  , f_snoice       = 'x' 
+  , f_meltt        = 'x'
+  , f_meltb        = 'x'
+  , f_meltl        = 'x'
+  , f_fresh        = 'x'
+  , f_fresh_ai     = 'x'
+  , f_fsalt        = 'x'
+  , f_fsalt_ai     = 'x'
+  , f_fhocn        = 'x' 
+  , f_fhocn_ai     = 'x' 
+  , f_fswthru      = 'x' 
+  , f_fswthru_ai   = 'x' 
+  , f_fsurf_ai     = 'x'
+  , f_fcondtop_ai  = 'x'
+  , f_fmeltt_ai    = 'x' 
+  , f_strairx      = 'x' 
+  , f_strairy      = 'x' 
+  , f_strtltx      = 'x' 
+  , f_strtlty      = 'x' 
+  , f_strcorx      = 'x' 
+  , f_strcory      = 'x' 
+  , f_strocnx      = 'x' 
+  , f_strocny      = 'x' 
+  , f_strintx      = 'x' 
+  , f_strinty      = 'x'
+  , f_strength     = 'x'
+  , f_divu         = 'x'
+  , f_shear        = 'x'
+  , f_sig1         = 'x' 
+  , f_sig2         = 'x' 
+  , f_dvidtt       = 'x' 
+  , f_dvidtd       = 'x' 
+  , f_daidtt       = 'x'
+  , f_daidtd       = 'x' 
+  , f_mlt_onset    = 'x'
+  , f_frz_onset    = 'x'
+  , f_dardg1dt     = 'x'
+  , f_dardg2dt     = 'x'
+  , f_dvirdgdt     = 'x'
+  , f_opening      = 'x'
+  , f_hisnap       = 'x'
+  , f_aisnap       = 'x'
+  , f_trsig        = 'x'
+  , f_icepresent   = 'x'
+  , f_iage         = 'x'
+  , f_alvl         = 'x'
+  , f_vlvl         = 'x'
+  , f_ardg         = 'x'
+  , f_vrdg         = 'x'
+  , f_aicen        = 'x'
+  , f_vicen        = 'x'
+  , f_Tinz         = 'x'
+  , f_Tsnz         = 'x'
+  , f_fsurfn_ai    = 'x'
+  , f_fcondtopn_ai = 'x'
+  , f_fmelttn_ai   = 'x'
+  , f_flatn_ai     = 'x'
+  , f_apondn       = 'x'
+/

ice/diagnostic_profiles/ice_history_spinup.nml

@@ -2,17 +2,17 @@ format: yamanifest
 version: 1.0
 ---
 work/atmosphere/um_hg3.exe:
-  fullpath: /g/data/vk83/apps/spack/0.22/restricted/ukmo/release/linux-rocky8-x86_64_v4/intel-19.0.3.199/um7-git.2024.07.03_access-esm1.5-kgxooyp2s476dd4zc5mgtwhxfknkhnoe/bin/um_hg3.exe
+  fullpath: /g/data/vk83/apps/spack/0.22/restricted/ukmo/release/linux-rocky8-x86_64_v4/intel-19.0.3.199/um7-git.2024.10.17_access-esm1.5-l3w5m5ub4qkaai4rqsrixyeggwvenqeg/bin/um_hg3.exe
   hashes:
-    binhash: 3180dda616c7dfe63d8134e00bff2641
-    md5: 1b7874ffb5e34ec50b6a68abbb7769a6
+    binhash: 7d84592b11262545ecbe8a9d10f69055
+    md5: 93c8bca8d07dd29b94e0a62ffc31c4f6
 work/ice/cice_access_360x300_12x1_12p.exe:
-  fullpath: /g/data/vk83/apps/spack/0.22/restricted/ukmo/release/linux-rocky8-x86_64_v4/intel-19.0.3.199/cice4-git.2024.05.21_access-esm1.5-hhtnigwxdyz7ta4dv3gvhwulze6hxqra/bin/cice_access_360x300_12x1_12p.exe
+  fullpath: /g/data/vk83/apps/spack/0.22/restricted/ukmo/release/linux-rocky8-x86_64_v4/intel-19.0.3.199/cice4-git.2024.05.21_access-esm1.5-izhg4i36v6nzwulk5doeb2b4tv7dvjpg/bin/cice_access_360x300_12x1_12p.exe
   hashes:
-    binhash: 818f213e53d30fc307b565c35939382c
-    md5: 04fd88249ebc16e3f560fc265838e9d1
+    binhash: 4e0b0196ffa6cd59c554682ca6cd60bb
+    md5: 0bf593b74adb9060885fc875fa5fe23b
 work/ocean/fms_ACCESS-CM.x:
-  fullpath: /g/data/vk83/apps/spack/0.22/restricted/ukmo/release/linux-rocky8-x86_64_v4/intel-19.0.3.199/mom5-git.access-esm1.5_2024.08.23_access-esm1.5-ougudnkjcdkuuu6wuxne3uy7tr4y6oes/bin/fms_ACCESS-CM.x
+  fullpath: /g/data/vk83/apps/spack/0.22/restricted/ukmo/release/linux-rocky8-x86_64_v4/intel-19.0.3.199/mom5-git.access-esm1.5_2024.08.23_access-esm1.5-m5h4mmwug6umrm7iqqvctnvsy4hwp2wv/bin/fms_ACCESS-CM.x
   hashes:
-    binhash: 711dd9e382eee06aba1f38ce83f7e7d5
-    md5: 96863931103def85ed76b152ba01b5c1
+    binhash: 794da19ceaf34a3babb2b24d96b9b018
+    md5: 86fd7c5105c40f8524cee935718a2138