diff --git a/atmosphere/cable.nml b/atmosphere/cable.nml index 7000e48..8489352 100644 --- a/atmosphere/cable.nml +++ b/atmosphere/cable.nml @@ -1,7 +1,7 @@ &cable ! - filename%veg = 'INPUT/CABLE-AUX-1.4/core/biogeophys/def_veg_params.txt' !relative to your home dir - filename%soil = 'INPUT/CABLE-AUX-1.4/core/biogeophys/def_soil_params.txt' !relative to your home dir + filename%veg = 'INPUT/def_veg_params.txt' + filename%soil = 'INPUT/def_soil_params.txt' ! ! !! cable_user flags @@ -53,7 +53,6 @@ l_laiFeedbk = .TRUE. ! using prognostic LAI l_vcmaxFeedbk = .TRUE. ! using prognostic Vcmax ! filenames for CASA-CNP input files -! casafile%cnpbiome='INPUT/CABLE-AUX-1.4/core/biogeochem/pftlookup_csiro_v16_17tiles.csv' ! biome specific BGC parameters - casafile%cnpbiome='INPUT/CABLE-AUX-1.4/core/biogeochem/pftlookup_csiro_v16_17tiles_wtlnds.csv' ! biome specific BGC parameters - casafile%phen='INPUT/CABLE-AUX-1.4/core/biogeochem/modis_phenology_csiro.txt' ! phenology by latitude (modis derived) + casafile%cnpbiome='INPUT/pftlookup_csiro_v16_17tiles_wtlnds.csv' ! biome specific BGC parameters + casafile%phen='INPUT/modis_phenology_csiro.txt' ! phenology by latitude (modis derived) &end diff --git a/config.yaml b/config.yaml index abbc15e..b7d02dc 100644 --- a/config.yaml +++ b/config.yaml @@ -2,9 +2,10 @@ jobname: pre-industrial queue: normal walltime: 2:00:00 +# Modules for loading model executables modules: use: - - /g/data/vk83/apps/spack/0.22/release/modules/linux-rocky8-x86_64_v4 + - /g/data/vk83/modules/access-models/ load: - access-esm1p5/2024.05.0 @@ -18,28 +19,80 @@ submodels: ncpus: 192 exe: um_hg3.exe input: - - /g/data/access/payu/access-esm/input/pre-industrial/atmosphere + # Aerosols + - /g/data/vk83/configurations/inputs/access-esm1p5/modern/pre-industrial/atmosphere/aerosol/global.N96/2020.05.19/OCFF_1850_ESM1.anc + - /g/data/vk83/configurations/inputs/access-esm1p5/modern/pre-industrial/atmosphere/aerosol/global.N96/2020.05.19/BC_hi_1850_ESM1.anc + - /g/data/vk83/configurations/inputs/access-esm1p5/modern/pre-industrial/atmosphere/aerosol/global.N96/2020.05.19/scycl_1850_ESM1_v4.anc + - /g/data/vk83/configurations/inputs/access-esm1p5/modern/pre-industrial/atmosphere/aerosol/global.N96/2020.05.19/Bio_1850_ESM1.anc + - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/atmosphere/aerosol/global.N96/2020.05.19/biogenic_351sm.N96L38 + - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/atmosphere/aerosol/global.N96/2020.05.19/sulpc_oxidants_N96_L38 + - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/atmosphere/aerosol/global.N96/2020.05.19/DMS_conc.N96 + # Forcing + - /g/data/vk83/configurations/inputs/access-esm1p5/modern/pre-industrial/atmosphere/forcing/global.N96/2020.05.19/ozone_1850_ESM1.anc + - /g/data/vk83/configurations/inputs/access-esm1p5/modern/pre-industrial/atmosphere/forcing/resolution_independent/2020.05.19/volcts_18502000ave.dat + # Land + - /g/data/vk83/configurations/inputs/access-esm1p5/modern/pre-industrial/atmosphere/land/biogeochemistry/global.N96/2020.05.19/Ndep_1850_ESM1.anc + - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/atmosphere/land/soiltype/global.N96/2020.05.19/qrparm.soil_igbp_vg + - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/atmosphere/land/vegetation/global.N96/2020.05.19/cable_vegfunc_N96.anc + - /g/data/vk83/configurations/inputs/access-esm1p5/share/atmosphere/land/biogeochemistry/resolution_independent/2020.05.19/modis_phenology_csiro.txt + - /g/data/vk83/configurations/inputs/access-esm1p5/share/atmosphere/land/biogeochemistry/resolution_independent/2020.05.19/pftlookup_csiro_v16_17tiles_wtlnds.csv + - /g/data/vk83/configurations/inputs/access-esm1p5/share/atmosphere/land/biogeophysics/resolution_independent/2020.05.19/def_soil_params.txt + - /g/data/vk83/configurations/inputs/access-esm1p5/share/atmosphere/land/biogeophysics/resolution_independent/2020.05.19/def_veg_params.txt + # Spectral + - /g/data/vk83/configurations/inputs/access-esm1p5/share/atmosphere/spectral/resolution_independent/2020.05.19/spec3a_sw_hadgem1_6on + - /g/data/vk83/configurations/inputs/access-esm1p5/share/atmosphere/spectral/resolution_independent/2020.05.19/spec3a_lw_hadgem1_6on + # Grids + - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/atmosphere/grids/global.N96/2020.05.19/qrparm.mask + - /g/data/vk83/configurations/inputs/access-esm1p5/share/atmosphere/grids/resolution_independent/2020.05.19/vertlevs_G3 + # STASH + - /g/data/vk83/configurations/inputs/access-esm1p5/share/atmosphere/stash/2020.05.19/ - name: ocean model: mom ncpus: 180 exe: fms_ACCESS-CM.x input: - - /g/data/access/payu/access-esm/input/pre-industrial/ocean/common - - /g/data/access/payu/access-esm/input/pre-industrial/ocean/pre-industrial - + # Biogeochemistry + - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/ocean/biogeochemistry/global.1deg/2020.05.19/dust.nc + - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/ocean/biogeochemistry/global.1deg/2020.05.19/ocmip2_press_monthly_om1p5_bc.nc + - /g/data/vk83/configurations/inputs/access-esm1p5/share/ocean/biogeochemistry/global.1deg/2024.07.12/bgc_param.nc + - /g/data/vk83/configurations/inputs/access-esm1p5/modern/unused/ocean/biogeochemistry/global.1deg/2020.05.19/ocmip2_fice_monthly_om1p5_bc.nc + - /g/data/vk83/configurations/inputs/access-esm1p5/modern/unused/ocean/biogeochemistry/global.1deg/2020.05.19/ocmip2_xkw_monthly_om1p5_bc.nc + # Tides + - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/ocean/tides/global.1deg/2020.05.19/roughness_amp.nc + - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/ocean/tides/global.1deg/2020.05.19/tideamp.nc + # Shortwave + - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/ocean/shortwave_penetration/global.1deg/2020.05.19/ssw_atten_depth.nc + # Grids + - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/ocean/grids/mosaic/global.1deg/2020.05.19/grid_spec.nc + - name: ice model: cice ncpus: 12 exe: cice_access_360x300_12x1_12p.exe input: - - /g/data/access/payu/access-esm/input/pre-industrial/ice + # Grids + - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/ice/grids/global.1deg/2020.05.19/kmt.nc + - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/ice/grids/global.1deg/2020.05.19/grid.nc + # Climatology + - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/ice/climatology/global.1deg/2020.05.19/monthly_sstsss.nc - name: coupler model: oasis ncpus: 0 input: - - /g/data/access/payu/access-esm/input/pre-industrial/coupler + # Grids + - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/coupler/grids/global.oi_1deg.a_N96/2020.05.19/grids.nc + - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/coupler/grids/global.oi_1deg.a_N96/2020.05.19/areas.nc + - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/coupler/grids/global.oi_1deg.a_N96/2020.05.19/masks.nc + # Remapping weights + - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/coupler/remapping_weights/global.oi_1deg.a_N96/2020.05.19/rmp_cice_to_um1t_CONSERV_FRACNNEI.nc + - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/coupler/remapping_weights/global.oi_1deg.a_N96/2020.05.19/rmp_um1u_to_cice_CONSERV_FRACNNEI.nc + - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/coupler/remapping_weights/global.oi_1deg.a_N96/2020.05.19/rmp_um1t_to_cice_CONSERV_DESTAREA.nc + - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/coupler/remapping_weights/global.oi_1deg.a_N96/2020.05.19/rmp_cice_to_um1u_CONSERV_FRACNNEI.nc + - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/coupler/remapping_weights/global.oi_1deg.a_N96/2020.05.19/rmp_um1v_to_cice_CONSERV_FRACNNEI.nc + - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/coupler/remapping_weights/global.oi_1deg.a_N96/2020.05.19/rmp_um1t_to_cice_CONSERV_FRACNNEI.nc + - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/coupler/remapping_weights/global.oi_1deg.a_N96/2020.05.19/rmp_cice_to_um1v_CONSERV_FRACNNEI.nc collate: exe: mppnccombine.spack @@ -47,7 +100,7 @@ collate: mem: 4GB walltime: 1:00:00 -restart: /g/data/vk83/experiments/inputs/access-esm1p5/pre-industrial/restart/ +restart: /g/data/vk83/configurations/inputs/access-esm1p5/modern/pre-industrial/restart/ calendar: start: diff --git a/manifests/input.yaml b/manifests/input.yaml index 7eb82cd..7c1d1d7 100644 --- a/manifests/input.yaml +++ b/manifests/input.yaml @@ -2,407 +2,342 @@ format: yamanifest version: 1.0 --- work/atmosphere/INPUT/BC_hi_1850_ESM1.anc: - fullpath: /g/data/access/payu/access-esm/input/pre-industrial/atmosphere/BC_hi_1850_ESM1.anc + fullpath: /g/data/vk83/configurations/inputs/access-esm1p5/modern/pre-industrial/atmosphere/aerosol/global.N96/2020.05.19/BC_hi_1850_ESM1.anc hashes: - binhash: 701eb25da0f3c9b0a430da1b51449a0a + binhash: a98741eb50f16483786933e6bbd700e3 md5: 74803eb36a358f9ac8ecdae36cdb7f56 work/atmosphere/INPUT/Bio_1850_ESM1.anc: - fullpath: /g/data/access/payu/access-esm/input/pre-industrial/atmosphere/Bio_1850_ESM1.anc + fullpath: /g/data/vk83/configurations/inputs/access-esm1p5/modern/pre-industrial/atmosphere/aerosol/global.N96/2020.05.19/Bio_1850_ESM1.anc hashes: - binhash: bc0648b654c77fd6ec194f0ebc5ee489 + binhash: 4ee80aefae4975731a21667b5b26343f md5: 69dc6afb4bc7524d346f3b82f2657c97 -work/atmosphere/INPUT/CABLE-AUX-1.4/core/biogeochem/modis_phenology_csiro.txt: - fullpath: /g/data/access/payu/access-esm/input/pre-industrial/atmosphere/CABLE-AUX-1.4/core/biogeochem/modis_phenology_csiro.txt - hashes: - binhash: 29a05874c8b52806ec4273e04df58e62 - md5: a7b89d25cff82cf13cf812a98ad3a029 -work/atmosphere/INPUT/CABLE-AUX-1.4/core/biogeochem/pftlookup_csiro_v16_17tiles.csv: - fullpath: /g/data/access/payu/access-esm/input/pre-industrial/atmosphere/CABLE-AUX-1.4/core/biogeochem/pftlookup_csiro_v16_17tiles.csv - hashes: - binhash: 25dbaecf930f7f09243984e1f247a4a2 - md5: 8a0fd917ed5f20bb055decef119d394e -work/atmosphere/INPUT/CABLE-AUX-1.4/core/biogeochem/pftlookup_csiro_v16_17tiles_spinup.csv: - fullpath: /g/data/access/payu/access-esm/input/pre-industrial/atmosphere/CABLE-AUX-1.4/core/biogeochem/pftlookup_csiro_v16_17tiles_spinup.csv - hashes: - binhash: cc36f541c3cfa76bd1ca1767441878d1 - md5: 043997298518f6d819f49634e8948be4 -work/atmosphere/INPUT/CABLE-AUX-1.4/core/biogeochem/pftlookup_csiro_v16_17tiles_wtlnds.csv: - fullpath: /g/data/access/payu/access-esm/input/pre-industrial/atmosphere/CABLE-AUX-1.4/core/biogeochem/pftlookup_csiro_v16_17tiles_wtlnds.csv - hashes: - binhash: d5dcc7c9459d4d9080733782abbab4af - md5: a526e6d3a2ad2e24d069a3b9a572def7 -work/atmosphere/INPUT/CABLE-AUX-1.4/core/biogeochem/poolcnpInTumbarumba.csv: - fullpath: /g/data/access/payu/access-esm/input/pre-industrial/atmosphere/CABLE-AUX-1.4/core/biogeochem/poolcnpInTumbarumba.csv - hashes: - binhash: 94ffafc2c12869e0c89c6d7933b932d1 - md5: 6a4ee7bbb2e7bd074be9d036bf40d9e2 -work/atmosphere/INPUT/CABLE-AUX-1.4/core/biogeophys/def_soil_params.txt: - fullpath: /g/data/access/payu/access-esm/input/pre-industrial/atmosphere/CABLE-AUX-1.4/core/biogeophys/def_soil_params.txt - hashes: - binhash: 72cff3be9be9a986ec2a530732e5af39 - md5: 93107e8c37e04ccf97471fd2ac8f63eb -work/atmosphere/INPUT/CABLE-AUX-1.4/core/biogeophys/def_veg_params.txt: - fullpath: /g/data/access/payu/access-esm/input/pre-industrial/atmosphere/CABLE-AUX-1.4/core/biogeophys/def_veg_params.txt - hashes: - binhash: 27a407dd57b0ceba94c9bbb2be3346b8 - md5: 1f9a27f0e252bf6c466100573c126789 work/atmosphere/INPUT/DMS_conc.N96: - fullpath: /g/data/access/payu/access-esm/input/pre-industrial/atmosphere/DMS_conc.N96 + fullpath: /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/atmosphere/aerosol/global.N96/2020.05.19/DMS_conc.N96 hashes: - binhash: 56eda93e098dfefdef6d44a0bf06e958 + binhash: da1baa25e78ec281c82ea4588e30a340 md5: 7e8ec8de832c0b9b8c1d9f0eda4d54e5 work/atmosphere/INPUT/Ndep_1850_ESM1.anc: - fullpath: /g/data/access/payu/access-esm/input/pre-industrial/atmosphere/Ndep_1850_ESM1.anc + fullpath: /g/data/vk83/configurations/inputs/access-esm1p5/modern/pre-industrial/atmosphere/land/biogeochemistry/global.N96/2020.05.19/Ndep_1850_ESM1.anc hashes: - binhash: 0eeb7a9a885bc51be3b28b546a8f6d2d + binhash: 47374849ef42f83e3c02629827a482ee md5: 48462cfa1aeed200c3b8d0bf1b49654a work/atmosphere/INPUT/OCFF_1850_ESM1.anc: - fullpath: /g/data/access/payu/access-esm/input/pre-industrial/atmosphere/OCFF_1850_ESM1.anc + fullpath: /g/data/vk83/configurations/inputs/access-esm1p5/modern/pre-industrial/atmosphere/aerosol/global.N96/2020.05.19/OCFF_1850_ESM1.anc hashes: - binhash: 2e48b826853e9ea77aa3e2571428770f + binhash: 0ec3fde7a17984009b8d90ff1ddbc92f md5: 95eec04860fa30ee863d30e67e683407 -work/atmosphere/INPUT/SOURCES: - fullpath: /g/data/access/payu/access-esm/input/pre-industrial/atmosphere/SOURCES - hashes: - binhash: 23f2d99ea24c4ae416249f6fd10f3a46 - md5: 5b3a5f40cb3a2ba0df1f3251e65194b6 work/atmosphere/INPUT/STASHmaster/STASHmaster_A: - fullpath: /g/data/access/payu/access-esm/input/pre-industrial/atmosphere/STASHmaster/STASHmaster_A + fullpath: /g/data/vk83/configurations/inputs/access-esm1p5/share/atmosphere/stash/2020.05.19/STASHmaster/STASHmaster_A hashes: - binhash: ac186e9b28d4ee478477d5e3532f9c85 + binhash: 4f75001536d84c87362b607aa42c4f61 md5: 74cbbb76edfbd9f7c4b928609c00cd64 work/atmosphere/INPUT/STASHmaster/STASHmaster_A.original: - fullpath: /g/data/access/payu/access-esm/input/pre-industrial/atmosphere/STASHmaster/STASHmaster_A.original + fullpath: /g/data/vk83/configurations/inputs/access-esm1p5/share/atmosphere/stash/2020.05.19/STASHmaster/STASHmaster_A.original hashes: - binhash: fc8c2bab866aa0c4212fc553bba90485 + binhash: c7d3efdc2ca645724064afc4f7e655f6 md5: ed1004d9aca8d29baba143ea12defbb7 work/atmosphere/INPUT/STASHmaster/STASHmaster_O: - fullpath: /g/data/access/payu/access-esm/input/pre-industrial/atmosphere/STASHmaster/STASHmaster_O + fullpath: /g/data/vk83/configurations/inputs/access-esm1p5/share/atmosphere/stash/2020.05.19/STASHmaster/STASHmaster_O hashes: - binhash: a372d2fa943fb85027b7dfba31c71642 + binhash: 763bf187687a18a505264b4b79d40153 md5: 5a65d77c62d55e3b62e35ad9662d32a9 work/atmosphere/INPUT/STASHmaster/STASHmaster_S: - fullpath: /g/data/access/payu/access-esm/input/pre-industrial/atmosphere/STASHmaster/STASHmaster_S + fullpath: /g/data/vk83/configurations/inputs/access-esm1p5/share/atmosphere/stash/2020.05.19/STASHmaster/STASHmaster_S hashes: - binhash: d8e16218632dd3befe53a79bf7547072 + binhash: 6d6eb7e1e0f21e635e532202f7b8d462 md5: 85ff5d563968cf24d1be595b05b4e52d work/atmosphere/INPUT/STASHmaster/STASHmaster_W: - fullpath: /g/data/access/payu/access-esm/input/pre-industrial/atmosphere/STASHmaster/STASHmaster_W + fullpath: /g/data/vk83/configurations/inputs/access-esm1p5/share/atmosphere/stash/2020.05.19/STASHmaster/STASHmaster_W hashes: - binhash: 4b5c5ff64c2c06becea4b20f89bb2600 + binhash: 919a2c8987bd593c78153ff323efeb51 md5: 1e4391ea1f6234b33c33168bd7089d06 work/atmosphere/INPUT/STASHmaster/STASHsections_A: - fullpath: /g/data/access/payu/access-esm/input/pre-industrial/atmosphere/STASHmaster/STASHsections_A + fullpath: /g/data/vk83/configurations/inputs/access-esm1p5/share/atmosphere/stash/2020.05.19/STASHmaster/STASHsections_A hashes: - 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