Deploying to main from @ AMReX-Codes/amrex@b05f69f 🚀

Author: WeiqunZhang

amrex/docs_html/_downloads/008eb6dbfab802633dff40122ece848c/amrex.pdf

@@ -115,6 +115,7 @@
 <code>#include &lt;iostream&gt;</code><br />
 <code>#include &lt;limits&gt;</code><br />
 <code>#include &lt;numeric&gt;</code><br />
+<code>#include &lt;unordered_map&gt;</code><br />
 <code>#include &lt;regex&gt;</code><br />
 <code>#include &lt;sstream&gt;</code><br />
 <code>#include &lt;stdexcept&gt;</code><br />

amrex/docs_html/doxygen/AMReX__ParmParse_8H_source.html

@@ -2695,9 +2695,9 @@
 <div class="ttc" id="aclassamrex_1_1ParIter__impl_html"><div class="ttname"><a href="classamrex_1_1ParIter__impl.html">amrex::ParIter_impl</a></div><div class="ttdef"><b>Definition:</b> AMReX_ParIter.H:113</div></div>
 <div class="ttc" id="aclassamrex_1_1ParallelDescriptor_1_1Message_html_a3dd73a745e975beb885a19b708190cbe"><div class="ttname"><a href="classamrex_1_1ParallelDescriptor_1_1Message.html#a3dd73a745e975beb885a19b708190cbe">amrex::ParallelDescriptor::Message::req</a></div><div class="ttdeci">MPI_Request req() const</div><div class="ttdef"><b>Definition:</b> AMReX_ParallelDescriptor.H:74</div></div>
 <div class="ttc" id="aclassamrex_1_1ParmParse_html"><div class="ttname"><a href="classamrex_1_1ParmParse.html">amrex::ParmParse</a></div><div class="ttdoc">Parse Parameters From Command Line and Input Files.</div><div class="ttdef"><b>Definition:</b> AMReX_ParmParse.H:290</div></div>
-<div class="ttc" id="aclassamrex_1_1ParmParse_html_a54307dd658a96ac490ce75a3f74defe2"><div class="ttname"><a href="classamrex_1_1ParmParse.html#a54307dd658a96ac490ce75a3f74defe2">amrex::ParmParse::queryarr</a></div><div class="ttdeci">int queryarr(const char *name, std::vector&lt; int &gt; &amp;ref, int start_ix=FIRST, int num_val=ALL) const</div><div class="ttdoc">Same as queryktharr() but searches for last occurrence of name.</div><div class="ttdef"><b>Definition:</b> AMReX_ParmParse.cpp:1318</div></div>
+<div class="ttc" id="aclassamrex_1_1ParmParse_html_a54307dd658a96ac490ce75a3f74defe2"><div class="ttname"><a href="classamrex_1_1ParmParse.html#a54307dd658a96ac490ce75a3f74defe2">amrex::ParmParse::queryarr</a></div><div class="ttdeci">int queryarr(const char *name, std::vector&lt; int &gt; &amp;ref, int start_ix=FIRST, int num_val=ALL) const</div><div class="ttdoc">Same as queryktharr() but searches for last occurrence of name.</div><div class="ttdef"><b>Definition:</b> AMReX_ParmParse.cpp:1345</div></div>
 <div class="ttc" id="aclassamrex_1_1ParmParse_html_a5a524b8c11f99e8ef86fd6bbc1a33493"><div class="ttname"><a href="classamrex_1_1ParmParse.html#a5a524b8c11f99e8ef86fd6bbc1a33493">amrex::ParmParse::queryAdd</a></div><div class="ttdeci">int queryAdd(const char *name, T &amp;ref)</div><div class="ttdoc">If name is found, the value in the ParmParse database will be stored in the ref argument....</div><div class="ttdef"><b>Definition:</b> AMReX_ParmParse.H:963</div></div>
-<div class="ttc" id="aclassamrex_1_1ParmParse_html_aa98ab18bc26692876f9590316af5b1fa"><div class="ttname"><a href="classamrex_1_1ParmParse.html#aa98ab18bc26692876f9590316af5b1fa">amrex::ParmParse::query</a></div><div class="ttdeci">int query(const char *name, bool &amp;ref, int ival=FIRST) const</div><div class="ttdoc">Same as querykth() but searches for the last occurrence of name.</div><div class="ttdef"><b>Definition:</b> AMReX_ParmParse.cpp:1251</div></div>
+<div class="ttc" id="aclassamrex_1_1ParmParse_html_aa98ab18bc26692876f9590316af5b1fa"><div class="ttname"><a href="classamrex_1_1ParmParse.html#aa98ab18bc26692876f9590316af5b1fa">amrex::ParmParse::query</a></div><div class="ttdeci">int query(const char *name, bool &amp;ref, int ival=FIRST) const</div><div class="ttdoc">Same as querykth() but searches for the last occurrence of name.</div><div class="ttdef"><b>Definition:</b> AMReX_ParmParse.cpp:1278</div></div>
 <div class="ttc" id="aclassamrex_1_1ParticleContainer__impl_html"><div class="ttname"><a href="classamrex_1_1ParticleContainer__impl.html">amrex::ParticleContainer_impl</a></div><div class="ttdoc">A distributed container for Particles sorted onto the levels, grids, and tiles of a block-structured ...</div><div class="ttdef"><b>Definition:</b> AMReX_ParticleContainer.H:144</div></div>
 <div class="ttc" id="aclassamrex_1_1ParticleContainer__impl_html_a2a95432c01c58984730881db4e162f02"><div class="ttname"><a href="classamrex_1_1ParticleContainer__impl.html#a2a95432c01c58984730881db4e162f02">amrex::ParticleContainer_impl::ParticleLevel</a></div><div class="ttdeci">std::map&lt; std::pair&lt; int, int &gt;, ParticleTileType &gt; ParticleLevel</div><div class="ttdef"><b>Definition:</b> AMReX_ParticleContainer.H:185</div></div>
 <div class="ttc" id="aclassamrex_1_1ParticleContainer__impl_html_a3995a8f437ce88e5a973f4f2f97501bf"><div class="ttname"><a href="classamrex_1_1ParticleContainer__impl.html#a3995a8f437ce88e5a973f4f2f97501bf">amrex::ParticleContainer_impl::AoS</a></div><div class="ttdeci">typename ParticleTileType::AoS AoS</div><div class="ttdef"><b>Definition:</b> AMReX_ParticleContainer.H:186</div></div>

amrex/docs_html/doxygen/AMReX__ParmParse_8cpp.html

@@ -1402,7 +1402,7 @@
 <div class="ttc" id="aclassamrex_1_1PODVector_html"><div class="ttname"><a href="classamrex_1_1PODVector.html">amrex::PODVector</a></div><div class="ttdef"><b>Definition:</b> AMReX_PODVector.H:246</div></div>
 <div class="ttc" id="aclassamrex_1_1PODVector_html_a688bc1525c5bcb7456f6423383540666"><div class="ttname"><a href="classamrex_1_1PODVector.html#a688bc1525c5bcb7456f6423383540666">amrex::PODVector::begin</a></div><div class="ttdeci">iterator begin() noexcept</div><div class="ttdef"><b>Definition:</b> AMReX_PODVector.H:601</div></div>
 <div class="ttc" id="aclassamrex_1_1ParmParse_html"><div class="ttname"><a href="classamrex_1_1ParmParse.html">amrex::ParmParse</a></div><div class="ttdoc">Parse Parameters From Command Line and Input Files.</div><div class="ttdef"><b>Definition:</b> AMReX_ParmParse.H:290</div></div>
-<div class="ttc" id="aclassamrex_1_1ParmParse_html_aa98ab18bc26692876f9590316af5b1fa"><div class="ttname"><a href="classamrex_1_1ParmParse.html#aa98ab18bc26692876f9590316af5b1fa">amrex::ParmParse::query</a></div><div class="ttdeci">int query(const char *name, bool &amp;ref, int ival=FIRST) const</div><div class="ttdoc">Same as querykth() but searches for the last occurrence of name.</div><div class="ttdef"><b>Definition:</b> AMReX_ParmParse.cpp:1251</div></div>
+<div class="ttc" id="aclassamrex_1_1ParmParse_html_aa98ab18bc26692876f9590316af5b1fa"><div class="ttname"><a href="classamrex_1_1ParmParse.html#aa98ab18bc26692876f9590316af5b1fa">amrex::ParmParse::query</a></div><div class="ttdeci">int query(const char *name, bool &amp;ref, int ival=FIRST) const</div><div class="ttdoc">Same as querykth() but searches for the last occurrence of name.</div><div class="ttdef"><b>Definition:</b> AMReX_ParmParse.cpp:1278</div></div>
 <div class="ttc" id="aclassamrex_1_1ParticleContainer__impl_html"><div class="ttname"><a href="classamrex_1_1ParticleContainer__impl.html">amrex::ParticleContainer_impl</a></div><div class="ttdoc">A distributed container for Particles sorted onto the levels, grids, and tiles of a block-structured ...</div><div class="ttdef"><b>Definition:</b> AMReX_ParticleContainer.H:144</div></div>
 <div class="ttc" id="aclassamrex_1_1ParticleContainer__impl_html_acc301a126a29e5a25eba6ae159190ff4"><div class="ttname"><a href="classamrex_1_1ParticleContainer__impl.html#acc301a126a29e5a25eba6ae159190ff4">amrex::ParticleContainer_impl::IntVector</a></div><div class="ttdeci">typename SoA::IntVector IntVector</div><div class="ttdef"><b>Definition:</b> AMReX_ParticleContainer.H:190</div></div>
 <div class="ttc" id="aclassamrex_1_1ParticleContainer__impl_html_af9086e3760f0e461a8aa1cb5cbe2b608"><div class="ttname"><a href="classamrex_1_1ParticleContainer__impl.html#af9086e3760f0e461a8aa1cb5cbe2b608">amrex::ParticleContainer_impl::ParticleType</a></div><div class="ttdeci">T_ParticleType ParticleType</div><div class="ttdef"><b>Definition:</b> AMReX_ParticleContainer.H:146</div></div>

amrex/docs_html/doxygen/AMReX__ParticleContainerI_8H_source.html

@@ -438,9 +438,9 @@
 <div class="ttc" id="aclassamrex_1_1IntegratorBase_html_ad9211fc29fd1cd9a03025959738c90d4"><div class="ttname"><a href="classamrex_1_1IntegratorBase.html#ad9211fc29fd1cd9a03025959738c90d4">amrex::IntegratorBase::time_step</a></div><div class="ttdeci">amrex::Real time_step</div><div class="ttdoc">Current integrator time step size (Real)</div><div class="ttdef"><b>Definition:</b> AMReX_IntegratorBase.H:221</div></div>
 <div class="ttc" id="aclassamrex_1_1IntegratorBase_html_aea34558a8595abbdc1f9a5f3635fb4c2"><div class="ttname"><a href="classamrex_1_1IntegratorBase.html#aea34558a8595abbdc1f9a5f3635fb4c2">amrex::IntegratorBase::previous_time_step</a></div><div class="ttdeci">amrex::Real previous_time_step</div><div class="ttdoc">Step size of the last completed step (Real)</div><div class="ttdef"><b>Definition:</b> AMReX_IntegratorBase.H:226</div></div>
 <div class="ttc" id="aclassamrex_1_1ParmParse_html"><div class="ttname"><a href="classamrex_1_1ParmParse.html">amrex::ParmParse</a></div><div class="ttdoc">Parse Parameters From Command Line and Input Files.</div><div class="ttdef"><b>Definition:</b> AMReX_ParmParse.H:290</div></div>
-<div class="ttc" id="aclassamrex_1_1ParmParse_html_a24db67f875cbc2a56406c66f48d60b8a"><div class="ttname"><a href="classamrex_1_1ParmParse.html#a24db67f875cbc2a56406c66f48d60b8a">amrex::ParmParse::get</a></div><div class="ttdeci">void get(const char *name, bool &amp;ref, int ival=FIRST) const</div><div class="ttdoc">Same as getkth() but searches for the last occurrence of name.</div><div class="ttdef"><b>Definition:</b> AMReX_ParmParse.cpp:1234</div></div>
-<div class="ttc" id="aclassamrex_1_1ParmParse_html_a54307dd658a96ac490ce75a3f74defe2"><div class="ttname"><a href="classamrex_1_1ParmParse.html#a54307dd658a96ac490ce75a3f74defe2">amrex::ParmParse::queryarr</a></div><div class="ttdeci">int queryarr(const char *name, std::vector&lt; int &gt; &amp;ref, int start_ix=FIRST, int num_val=ALL) const</div><div class="ttdoc">Same as queryktharr() but searches for last occurrence of name.</div><div class="ttdef"><b>Definition:</b> AMReX_ParmParse.cpp:1318</div></div>
-<div class="ttc" id="aclassamrex_1_1ParmParse_html_a643cc1f0359446a7ba0a997e949af928"><div class="ttname"><a href="classamrex_1_1ParmParse.html#a643cc1f0359446a7ba0a997e949af928">amrex::ParmParse::getarr</a></div><div class="ttdeci">void getarr(const char *name, std::vector&lt; int &gt; &amp;ref, int start_ix=FIRST, int num_val=ALL) const</div><div class="ttdoc">Same as getktharr() but searches for last occurrence of name.</div><div class="ttdef"><b>Definition:</b> AMReX_ParmParse.cpp:1304</div></div>
+<div class="ttc" id="aclassamrex_1_1ParmParse_html_a24db67f875cbc2a56406c66f48d60b8a"><div class="ttname"><a href="classamrex_1_1ParmParse.html#a24db67f875cbc2a56406c66f48d60b8a">amrex::ParmParse::get</a></div><div class="ttdeci">void get(const char *name, bool &amp;ref, int ival=FIRST) const</div><div class="ttdoc">Same as getkth() but searches for the last occurrence of name.</div><div class="ttdef"><b>Definition:</b> AMReX_ParmParse.cpp:1261</div></div>
+<div class="ttc" id="aclassamrex_1_1ParmParse_html_a54307dd658a96ac490ce75a3f74defe2"><div class="ttname"><a href="classamrex_1_1ParmParse.html#a54307dd658a96ac490ce75a3f74defe2">amrex::ParmParse::queryarr</a></div><div class="ttdeci">int queryarr(const char *name, std::vector&lt; int &gt; &amp;ref, int start_ix=FIRST, int num_val=ALL) const</div><div class="ttdoc">Same as queryktharr() but searches for last occurrence of name.</div><div class="ttdef"><b>Definition:</b> AMReX_ParmParse.cpp:1345</div></div>
+<div class="ttc" id="aclassamrex_1_1ParmParse_html_a643cc1f0359446a7ba0a997e949af928"><div class="ttname"><a href="classamrex_1_1ParmParse.html#a643cc1f0359446a7ba0a997e949af928">amrex::ParmParse::getarr</a></div><div class="ttdeci">void getarr(const char *name, std::vector&lt; int &gt; &amp;ref, int start_ix=FIRST, int num_val=ALL) const</div><div class="ttdoc">Same as getktharr() but searches for last occurrence of name.</div><div class="ttdef"><b>Definition:</b> AMReX_ParmParse.cpp:1331</div></div>
 <div class="ttc" id="aclassamrex_1_1RKIntegrator_html"><div class="ttname"><a href="classamrex_1_1RKIntegrator.html">amrex::RKIntegrator</a></div><div class="ttdef"><b>Definition:</b> AMReX_RKIntegrator.H:22</div></div>
 <div class="ttc" id="aclassamrex_1_1RKIntegrator_html_a08eaaf01ad8b70caf0f561edb42114b4"><div class="ttname"><a href="classamrex_1_1RKIntegrator.html#a08eaaf01ad8b70caf0f561edb42114b4">amrex::RKIntegrator::~RKIntegrator</a></div><div class="ttdeci">virtual ~RKIntegrator()</div><div class="ttdef"><b>Definition:</b> AMReX_RKIntegrator.H:190</div></div>
 <div class="ttc" id="aclassamrex_1_1RKIntegrator_html_a2372340230301693e973e404c12618fa"><div class="ttname"><a href="classamrex_1_1RKIntegrator.html#a2372340230301693e973e404c12618fa">amrex::RKIntegrator::time_interpolate</a></div><div class="ttdeci">void time_interpolate(const T &amp;, const T &amp;S_old, amrex::Real timestep_fraction, T &amp;data) override</div><div class="ttdef"><b>Definition:</b> AMReX_RKIntegrator.H:277</div></div>

amrex/docs_html/doxygen/AMReX__ParticleIO_8H_source.html

@@ -743,7 +743,7 @@
 <div class="ttc" id="aclassamrex_1_1MultiFab_html"><div class="ttname"><a href="classamrex_1_1MultiFab.html">amrex::MultiFab</a></div><div class="ttdoc">A collection (stored as an array) of FArrayBox objects.</div><div class="ttdef"><b>Definition:</b> AMReX_MultiFab.H:38</div></div>
 <div class="ttc" id="aclassamrex_1_1MultiFab_html_ab70ce65ff46ae21b8cc4e0584fe26ffa"><div class="ttname"><a href="classamrex_1_1MultiFab.html#ab70ce65ff46ae21b8cc4e0584fe26ffa">amrex::MultiFab::Copy</a></div><div class="ttdeci">static void Copy(MultiFab &amp;dst, const MultiFab &amp;src, int srccomp, int dstcomp, int numcomp, int nghost)</div><div class="ttdoc">Copy from src to dst including nghost ghost cells. The two MultiFabs MUST have the same underlying Bo...</div><div class="ttdef"><b>Definition:</b> AMReX_MultiFab.cpp:193</div></div>
 <div class="ttc" id="aclassamrex_1_1ParmParse_html"><div class="ttname"><a href="classamrex_1_1ParmParse.html">amrex::ParmParse</a></div><div class="ttdoc">Parse Parameters From Command Line and Input Files.</div><div class="ttdef"><b>Definition:</b> AMReX_ParmParse.H:290</div></div>
-<div class="ttc" id="aclassamrex_1_1ParmParse_html_aa98ab18bc26692876f9590316af5b1fa"><div class="ttname"><a href="classamrex_1_1ParmParse.html#aa98ab18bc26692876f9590316af5b1fa">amrex::ParmParse::query</a></div><div class="ttdeci">int query(const char *name, bool &amp;ref, int ival=FIRST) const</div><div class="ttdoc">Same as querykth() but searches for the last occurrence of name.</div><div class="ttdef"><b>Definition:</b> AMReX_ParmParse.cpp:1251</div></div>
+<div class="ttc" id="aclassamrex_1_1ParmParse_html_aa98ab18bc26692876f9590316af5b1fa"><div class="ttname"><a href="classamrex_1_1ParmParse.html#aa98ab18bc26692876f9590316af5b1fa">amrex::ParmParse::query</a></div><div class="ttdeci">int query(const char *name, bool &amp;ref, int ival=FIRST) const</div><div class="ttdoc">Same as querykth() but searches for the last occurrence of name.</div><div class="ttdef"><b>Definition:</b> AMReX_ParmParse.cpp:1278</div></div>
 <div class="ttc" id="aclassamrex_1_1Print_html"><div class="ttname"><a href="classamrex_1_1Print.html">amrex::Print</a></div><div class="ttdoc">This class provides the user with a few print options.</div><div class="ttdef"><b>Definition:</b> AMReX_Print.H:35</div></div>
 <div class="ttc" id="aclassamrex_1_1SundialsIntegrator_html"><div class="ttname"><a href="classamrex_1_1SundialsIntegrator.html">amrex::SundialsIntegrator</a></div><div class="ttdef"><b>Definition:</b> AMReX_SundialsIntegrator.H:87</div></div>
 <div class="ttc" id="aclassamrex_1_1SundialsIntegrator_html_a01b848aa7893bf78e2e35fd06fbd7cb3"><div class="ttname"><a href="classamrex_1_1SundialsIntegrator.html#a01b848aa7893bf78e2e35fd06fbd7cb3">amrex::SundialsIntegrator::fast_LS</a></div><div class="ttdeci">SUNLinearSolver fast_LS</div><div class="ttdef"><b>Definition:</b> AMReX_SundialsIntegrator.H:123</div></div>

amrex/docs_html/doxygen/AMReX__RKIntegrator_8H_source.html

@@ -367,7 +367,7 @@
 <div class="ttc" id="aAMReX__SundialsIntegrator_8H_html"><div class="ttname"><a href="AMReX__SundialsIntegrator_8H.html">AMReX_SundialsIntegrator.H</a></div></div>
 <div class="ttc" id="aAMReX__Vector_8H_html"><div class="ttname"><a href="AMReX__Vector_8H.html">AMReX_Vector.H</a></div></div>
 <div class="ttc" id="aclassamrex_1_1ParmParse_html"><div class="ttname"><a href="classamrex_1_1ParmParse.html">amrex::ParmParse</a></div><div class="ttdoc">Parse Parameters From Command Line and Input Files.</div><div class="ttdef"><b>Definition:</b> AMReX_ParmParse.H:290</div></div>
-<div class="ttc" id="aclassamrex_1_1ParmParse_html_a24db67f875cbc2a56406c66f48d60b8a"><div class="ttname"><a href="classamrex_1_1ParmParse.html#a24db67f875cbc2a56406c66f48d60b8a">amrex::ParmParse::get</a></div><div class="ttdeci">void get(const char *name, bool &amp;ref, int ival=FIRST) const</div><div class="ttdoc">Same as getkth() but searches for the last occurrence of name.</div><div class="ttdef"><b>Definition:</b> AMReX_ParmParse.cpp:1234</div></div>
+<div class="ttc" id="aclassamrex_1_1ParmParse_html_a24db67f875cbc2a56406c66f48d60b8a"><div class="ttname"><a href="classamrex_1_1ParmParse.html#a24db67f875cbc2a56406c66f48d60b8a">amrex::ParmParse::get</a></div><div class="ttdeci">void get(const char *name, bool &amp;ref, int ival=FIRST) const</div><div class="ttdoc">Same as getkth() but searches for the last occurrence of name.</div><div class="ttdef"><b>Definition:</b> AMReX_ParmParse.cpp:1261</div></div>
 <div class="ttc" id="aclassamrex_1_1Print_html"><div class="ttname"><a href="classamrex_1_1Print.html">amrex::Print</a></div><div class="ttdoc">This class provides the user with a few print options.</div><div class="ttdef"><b>Definition:</b> AMReX_Print.H:35</div></div>
 <div class="ttc" id="aclassamrex_1_1TimeIntegrator_html"><div class="ttname"><a href="classamrex_1_1TimeIntegrator.html">amrex::TimeIntegrator</a></div><div class="ttdef"><b>Definition:</b> AMReX_TimeIntegrator.H:26</div></div>
 <div class="ttc" id="aclassamrex_1_1TimeIntegrator_html_a0b9f79016ad5d674f261835f9292b65a"><div class="ttname"><a href="classamrex_1_1TimeIntegrator.html#a0b9f79016ad5d674f261835f9292b65a">amrex::TimeIntegrator::set_adaptive_step</a></div><div class="ttdeci">void set_adaptive_step()</div><div class="ttdef"><b>Definition:</b> AMReX_TimeIntegrator.H:180</div></div>