Deploying to main from @ AMReX-Codes/amrex@6f039ae 🚀

Author: atmyers

amrex/docs_html/_downloads/008eb6dbfab802633dff40122ece848c/amrex.pdf

@@ -224,7 +224,7 @@
 <div class="ttc" id="aclassamrex_1_1Vector_html"><div class="ttname"><a href="classamrex_1_1Vector.html">amrex::Vector&lt; std::string &gt;</a></div></div>
 <div class="ttc" id="anamespaceamrex_html"><div class="ttname"><a href="namespaceamrex.html">amrex</a></div><div class="ttdef"><b>Definition:</b> AMReX_Amr.cpp:49</div></div>
 <div class="ttc" id="anamespaceamrex_html_a58624bde46f31353c6263dd50ec48bfd"><div class="ttname"><a href="namespaceamrex.html#a58624bde46f31353c6263dd50ec48bfd">amrex::MultiLevelToBlueprint</a></div><div class="ttdeci">void MultiLevelToBlueprint(int n_levels, const Vector&lt; const MultiFab * &gt; &amp;mfs, const Vector&lt; std::string &gt; &amp;varnames, const Vector&lt; Geometry &gt; &amp;geoms, Real time_value, const Vector&lt; int &gt; &amp;level_steps, const Vector&lt; IntVect &gt; &amp;ref_ratio, Node &amp;res)</div><div class="ttdef"><b>Definition:</b> AMReX_Conduit_Blueprint.cpp:341</div></div>
-<div class="ttc" id="anamespaceamrex_html_ade6b74b8d41502d861a0b0fe6a5982f4"><div class="ttname"><a href="namespaceamrex.html#ade6b74b8d41502d861a0b0fe6a5982f4">amrex::ParticleContainerToBlueprint</a></div><div class="ttdeci">void ParticleContainerToBlueprint(const ParticleContainer_impl&lt; ParticleType, NArrayReal, NArrayInt &gt; &amp;pc, const Vector&lt; std::string &gt; &amp;real_comp_names, const Vector&lt; std::string &gt; &amp;int_comp_names, conduit::Node &amp;res, const std::string &amp;topology_name)</div><div class="ttdef"><b>Definition:</b> AMReX_Conduit_Blueprint_ParticlesI.H:264</div></div>
+<div class="ttc" id="anamespaceamrex_html_ade6b74b8d41502d861a0b0fe6a5982f4"><div class="ttname"><a href="namespaceamrex.html#ade6b74b8d41502d861a0b0fe6a5982f4">amrex::ParticleContainerToBlueprint</a></div><div class="ttdeci">void ParticleContainerToBlueprint(const ParticleContainer_impl&lt; ParticleType, NArrayReal, NArrayInt &gt; &amp;pc, const Vector&lt; std::string &gt; &amp;real_comp_names, const Vector&lt; std::string &gt; &amp;int_comp_names, conduit::Node &amp;res, const std::string &amp;topology_name)</div><div class="ttdef"><b>Definition:</b> AMReX_Conduit_Blueprint_ParticlesI.H:249</div></div>
 <div class="ttc" id="anamespaceamrex_html_aec07a7132a048a1ab29b5a4b262eda8c"><div class="ttname"><a href="namespaceamrex.html#aec07a7132a048a1ab29b5a4b262eda8c">amrex::WriteBlueprintFiles</a></div><div class="ttdeci">void WriteBlueprintFiles(const conduit::Node &amp;bp_mesh, const std::string &amp;fname_base, int step, const std::string &amp;protocol)</div><div class="ttdef"><b>Definition:</b> AMReX_Conduit_Blueprint.cpp:463</div></div>
 <div class="ttc" id="anamespaceamrex_html_aede6d4189f1d218b26880a44405df55e"><div class="ttname"><a href="namespaceamrex.html#aede6d4189f1d218b26880a44405df55e">amrex::SingleLevelToBlueprint</a></div><div class="ttdeci">void SingleLevelToBlueprint(const MultiFab &amp;mf, const Vector&lt; std::string &gt; &amp;varnames, const Geometry &amp;geom, Real time_value, int level_step, Node &amp;res)</div><div class="ttdef"><b>Definition:</b> AMReX_Conduit_Blueprint.cpp:313</div></div>
 </div><!-- fragment --></div><!-- contents -->

amrex/docs_html/doxygen/AMReX__BinIterator_8H_source.html

@@ -411,8 +411,8 @@
 <div class="line"><a name="l00310"></a><span class="lineno">  310</span>&#160;        <a class="code" href="classamrex_1_1NeighborList.html#a9d4e86f7dc2ff83b23bcd1d0a3d04413">m_pstruct</a> = aos().dataPtr();</div>
 <div class="line"><a name="l00311"></a><span class="lineno">  311</span>&#160;        <span class="keyword">auto</span>* <span class="keyword">const</span> pstruct_ptr = aos().dataPtr();</div>
 <div class="line"><a name="l00312"></a><span class="lineno">  312</span>&#160; </div>
-<div class="line"><a name="l00313"></a><span class="lineno">  313</span>&#160;        <span class="keyword">const</span> <span class="keywordtype">size_t</span> np_total = aos.size();</div>
-<div class="line"><a name="l00314"></a><span class="lineno">  314</span>&#160;        <span class="keyword">const</span> <span class="keywordtype">size_t</span> np_real  = src_tile.numRealParticles();</div>
+<div class="line"><a name="l00313"></a><span class="lineno">  313</span>&#160;        <span class="keyword">const</span> <span class="keywordtype">int</span> np_total = aos.size();</div>
+<div class="line"><a name="l00314"></a><span class="lineno">  314</span>&#160;        <span class="keyword">const</span> <span class="keywordtype">int</span> np_real  = src_tile.numRealParticles();</div>
 <div class="line"><a name="l00315"></a><span class="lineno">  315</span>&#160; </div>
 <div class="line"><a name="l00316"></a><span class="lineno">  316</span>&#160;        <span class="keyword">auto</span> <span class="keyword">const</span>* off_bins_p = off_bins_v.<a class="code" href="classamrex_1_1PODVector.html#a52a678e008fab2346394fcad18bc90c4">data</a>();</div>
 <div class="line"><a name="l00317"></a><span class="lineno">  317</span>&#160;        <span class="keyword">auto</span> <span class="keyword">const</span>* dxi_p      = dxi_v.data();</div>
@@ -434,7 +434,7 @@
 <div class="line"><a name="l00333"></a><span class="lineno">  333</span>&#160; </div>
 <div class="line"><a name="l00334"></a><span class="lineno">  334</span>&#160;        <span class="comment">// First pass: count the number of neighbors for each particle</span></div>
 <div class="line"><a name="l00335"></a><span class="lineno">  335</span>&#160;        <span class="comment">//---------------------------------------------------------------------------------------------------------</span></div>
-<div class="line"><a name="l00336"></a><span class="lineno">  336</span>&#160;        <span class="keyword">const</span> <span class="keywordtype">size_t</span> np_size  = (num_bin_types &gt; 1) ? np_total : np_real;</div>
+<div class="line"><a name="l00336"></a><span class="lineno">  336</span>&#160;        <span class="keyword">const</span> <span class="keywordtype">int</span> np_size  = (num_bin_types &gt; 1) ? np_total : np_real;</div>
 <div class="line"><a name="l00337"></a><span class="lineno">  337</span>&#160;        <a class="code" href="classamrex_1_1NeighborList.html#a1de2b2bb7b0bb67975ada3971cbdeb5c">m_nbor_counts</a>.resize( np_size+1, 0);</div>
 <div class="line"><a name="l00338"></a><span class="lineno">  338</span>&#160;        <a class="code" href="classamrex_1_1NeighborList.html#aa4802374875adf70531e733654308316">m_nbor_offsets</a>.resize(np_size+1);</div>
 <div class="line"><a name="l00339"></a><span class="lineno">  339</span>&#160; </div>

amrex/docs_html/doxygen/AMReX__Conduit__Blueprint_8H_source.html

@@ -1166,7 +1166,7 @@
 <div class="line"><a name="l01065"></a><span class="lineno"> 1065</span>&#160;                            <span class="keywordflow">if</span> (isActualNeighbor) { <span class="keywordflow">break</span>; }</div>
 <div class="line"><a name="l01066"></a><span class="lineno"> 1066</span>&#160;                            <span class="keywordtype">int</span> nbr_cell_id = (ii * ny + jj) * nz + kk;</div>
 <div class="line"><a name="l01067"></a><span class="lineno"> 1067</span>&#160;                            <span class="keywordflow">for</span> (<span class="keyword">auto</span> p = poffset[nbr_cell_id]; p &lt; poffset[nbr_cell_id+1]; ++p) {</div>
-<div class="line"><a name="l01068"></a><span class="lineno"> 1068</span>&#160;                                <span class="keywordflow">if</span> (pperm[p] == i) { <span class="keywordflow">continue</span>; }</div>
+<div class="line"><a name="l01068"></a><span class="lineno"> 1068</span>&#160;                                <span class="keywordflow">if</span> (pperm[p] == <span class="keywordtype">int</span>(i)) { <span class="keywordflow">continue</span>; }</div>
 <div class="line"><a name="l01069"></a><span class="lineno"> 1069</span>&#160;                                <span class="keywordflow">if</span> (<a class="code" href="namespaceamrex_1_1detail.html#a7df5de70f7ab58e32c467a66af4fdbd9">detail::call_check_pair</a>(check_pair, ptile_data, ptile_data, i, pperm[p])) {</div>
 <div class="line"><a name="l01070"></a><span class="lineno"> 1070</span>&#160;                                    <a class="code" href="classamrex_1_1IntVectND.html">IntVect</a> cell_ijk = <a class="code" href="namespaceamrex.html#a6e7a7d55a9760a9b62a5675badced0e1">getParticleCell</a>(pstruct[pperm[p]], plo, dxi, domain);</div>
 <div class="line"><a name="l01071"></a><span class="lineno"> 1071</span>&#160;                                    <span class="keywordflow">if</span> (!box.<a class="code" href="classamrex_1_1BoxND.html#af53a02aea1a6ee01eab6d9e3f1f2c39a">contains</a>(cell_ijk)) {</div>