guide for docker

P:\>docker pull aertslab/pyscenic:0.12.1

P:\>docker info

P:\>docker run -it --rm -v "C:\Users\S236282\Desktop\Itaconate data\pySCENIC\docker:/data" aertslab/pyscenic:0.12.1 pyscenic grn --num_workers 6 -o /data/expr_mat.adjacencies.tsv /data/InjuryData_ExpressionT.csv /data/allTFs_mm.txt

P:\>docker run -it --rm -v "C:\Users\S236282\Desktop\Itaconate data\pySCENIC\docker:/data" aertslab/pyscenic:0.12.1 pyscenic ctx /data/expr_mat.adjacencies.tsv /data/mm10_500bp_up_100bp_down_full_tx_v10_clust.genes_vs_motifs.rankings.feather /data/mm10_10kbp_up_10kbp_down_full_tx_v10_clust.genes_vs_motifs.rankings.feather --annotations_fname /data/motifs-v10nr_clustnr_mgi.tbl --expression_mtx_fname /data/InjuryData_ExpressionT.csv --mode "custom_multiprocessing" --output /data/regulons.csv --num_workers 6

P:\>docker run -it --rm -v "C:\Users\S236282\Desktop\Itaconate data\pySCENIC\docker:/data" aertslab/pyscenic:0.12.1 pyscenic aucell /data/InjuryData_ExpressionT.csv /data/regulons.csv -o /data/auc_mtx.csv --num_workers 6