Changed README

Author: erikbergstrom

.DS_Store

@@ -1,5 +1,5 @@
 {
-    "path" : "~/Desktop/SigProfilerMatrixGeneratorR",
+    "path" : "~/Desktop/lab_shared_code/SigProfilerMatrixGeneratorR",
     "sortOrder" : [
         {
             "ascending" : true,

.Rproj.user/3B95E4F6/pcs/files-pane.pper

@@ -1,2 +1,3 @@
 ~%2FDesktop%2FSigProfilerMatrixGeneratorR%2FR%2FSigProfilerMatrixGeneratorR.R="A5674A2"
 ~%2FDesktop%2FSigProfilerMatrixGeneratorR%2FR%2Fhello.R="72561E2F"
+~%2FDesktop%2Flab_shared_code%2FSigProfilerMatrixGeneratorR%2FR%2FSigProfilerMatrixGeneratorR.R="9C4FFAD8"

.Rproj.user/3B95E4F6/sources/prop/INDEX

@@ -1,9 +1,10 @@
-[![Docs](https://img.shields.io/badge/docs-latest-blue.svg)](https://osf.io/s93d5/wiki/home/) [![License](https://img.shields.io/badge/License-BSD\%202--Clause-orange.svg)](https://opensource.org/licenses/BSD-2-Clause) [![Build Status](https://travis-ci.com/AlexandrovLab/SigProfilerMatrixGeneratorR.svg?branch=master)](https://travis-ci.com/AlexandrovLab/SigProfilerMatrixGeneratorR.svg?branch=master)
+[![Docs](https://img.shields.io/badge/docs-latest-blue.svg)](https://osf.io/s93d5/wiki/home/) [![License](https://img.shields.io/badge/License-BSD\%202--Clause-orange.svg)](https://opensource.org/licenses/BSD-2-Clause) [![Build Status](https://travis-ci.com/AlexandrovLab/SigProfilerMatrixGeneratorR.svg?branch=master)](https://travis-ci.com/AlexandrovLab/SigProfilerMatrixGeneratorR)
 
 # SigProfilerMatrixGeneratorR
 An R wrapper for running the SigProfilerMatrixGenerator (https://osf.io/s93d5/wiki/home/) framework.
 **INTRODUCTION**
 
+The purpose of this document is to provide a guide for using the SigProfilerMatrixGenerator framework to generate mutational matrices for a set of samples with associated mutational catalogues. An extensive Wiki page detailing the usage of this tool can be found at https://osf.io/s93d5/wiki/home/. For users that prefer working in a Python environment, the tool is written in Python and can be found and installed from: https://github.com/AlexandrovLab/SigProfilerMatrixGenerator
 
 **PREREQUISITES**