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testout11.html
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<HTML>
<HEAD>
<TITLE>SRAssembler Output</TITLE>
</HEAD>
<BODY>
<A NAME=top><A NAME=file1>
<H3>Libraries summary</H3><HR><PRE>
1 library is tested
<B>Library Insert size Paired reads</B>
------------------------------------------------------------------------------
<table border="0" cellpadding="0" cellspacing="0" width="22"><tr><td bgcolor="#ffffff"><pre>
1 200 1 input/reads1_200.fq,input/reads2_200.fq
</td></tr></table>Paired: 1 : paired-end, 0: single</PRE><H3>Assembly summary</H3><HR><PRE>
The final contigs file(<a href="all_contigs.fasta">all_contigs.fasta</a>) are generated from round 3 with k=0
</PRE><H5>The best k and the number of matched reads:</H5></PRE>
<PRE><B>Round Best_k Matched_reads</B>
----------------------------------------------------
<table border="0" cellpadding="0" cellspacing="0" width="22"><tr><td bgcolor="#ffffff"><pre>
3 25 5484
</td></tr></table></PRE>
<H5>N50:</H5>
<PRE><B>Round k=15 k=25 k=35 k=45 </B>
----------------------------------------------------
<table border="0" cellpadding="0" cellspacing="0" width="22"><tr><td bgcolor="#ffffff"><pre>
3 2904 <B><font color="red">5976</font></B> 4956 4648
</td></tr></table></PRE>
<H5>N90:</H5>
<PRE><B>Round k=15 k=25 k=35 k=45 </B>
----------------------------------------------------
<table border="0" cellpadding="0" cellspacing="0" width="22"><tr><td bgcolor="#ffffff"><pre>
3 2904 <B><font color="red">5976</font></B> 1018 980
</td></tr></table></PRE>
<H5>Longest contig length:</H5>
<PRE><B>Round k=15 k=25 k=35 k=45 </B>
----------------------------------------------------
<table border="0" cellpadding="0" cellspacing="0" width="22"><tr><td bgcolor="#ffffff"><pre>
3 2921 <B><font color="red">5976</font></B> 4956 4648
</td></tr></table></PRE>
<H5>Total contigs:</H5>
<PRE><B>Round k=15 k=25 k=35 k=45 </B>
----------------------------------------------------
<table border="0" cellpadding="0" cellspacing="0" width="22"><tr><td bgcolor="#ffffff"><pre>
3 3 <B><font color="red">1</font></B> 2 3
</td></tr></table>
The red number refers to "Best k"</PRE></PRE><H3>Spliced alignment - GenomeThreader</H3><HR><PRE>
Found 1 matches
The detailed GenomeThreader alignment report is <a href="output.aln">output.aln</a>
The contigs aligned to query sequences only can be found in <a href="hit_contigs.fasta">hit_contigs.fasta</a>
<B>Contig Strand Query Score Length Coverage G/P/C </B>
----------------------------------------------------------------------------------------------------------
contig1 - LOC_Os06g04560.1 0.698 2521 0.942 P
Length: cumulative length of scored exons
Cov G/P/C: coverage of contig (G) or cDNA (C) or protein (P), whichever is highest