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lwaldron · web-flow · commit fd80efff37a8 · 2020-07-13T14:09:46.000+02:00
Realized the same has to be done in the Dockerfile to install R packages from source in the image.
diff --git a/Dockerfile b/Dockerfile
@@ -4,4 +4,4 @@ WORKDIR /home/rstudio
 
 COPY --chown=rstudio:rstudio . /home/rstudio/
 
-RUN Rscript -e "devtools::install('.', dependencies=TRUE, build_vignettes=TRUE, repos = BiocManager::repositories())"
+RUN Rscript -e "options(repos = c(CRAN = 'https://cran.r-project.org')); devtools::install('.', dependencies=TRUE, build_vignettes=TRUE, repos = BiocManager::repositories())"

Original file line number	Diff line number	Diff line change
`@@ -4,4 +4,4 @@ WORKDIR /home/rstudio`
`4`	`4`
`5`	`5`	`COPY --chown=rstudio:rstudio . /home/rstudio/`
`6`	`6`
`7`		`-RUN Rscript -e "devtools::install('.', dependencies=TRUE, build_vignettes=TRUE, repos = BiocManager::repositories())"`
	`7`	`+RUN Rscript -e "options(repos = c(CRAN = 'https://cran.r-project.org')); devtools::install('.', dependencies=TRUE, build_vignettes=TRUE, repos = BiocManager::repositories())"`