Merge pull request #163 from kreczko/documentation-update

[MRG] Updating the documentation (Run 2)

Author: EmyrClement

README.md

@@ -8,6 +8,7 @@ Analysis software for TTbar+X differential cross section analysis (TOP-12-042)
 To setup the stand-alone version of the code:
 
 ```
+# this section will be revisited, please use CMSSW setup for now
 # get the code from the repository
 git clone https://github.com/BristolTopGroup/AnalysisSoftware.git AnalysisSoftware
 cd AnalysisSoftware
@@ -40,30 +41,30 @@ nohup ./AnalysisSoftware python/test_cfg.py &> test.log &
 To setup the code using CMSSW:
 
 ```
-# on soolin (scientific linux 5 machines)
-export SCRAM_ARCH=slc5_amd64_gcc462
-cmsrel CMSSW_6_0_0
-cd CMSSW_6_0_0/src
-cmsenv
-# OR on DICE (scientific linux 6 machines)
-. $VO_CMS_SW_DIR/cmsset_default.sh # echo $SCRAM_ARCH should now return slc6_amd64_gcc472
-cmsrel CMSSW_6_2_12
-cd CMSSW_6_2_12/src
+# on soolin (and other scientific linux 6 machines)
+export SCRAM_ARCH=slc6_amd64_gcc491
+# This version comes with ROOT 6.02/05
+scram p -n CMSSW_7_5_0_pre5_AS CMSSW_7_5_0_pre5
+cd CMSSW_7_5_0_pre4_AS/src/
 cmsenv
+# initialise CMS git
+git cms-init
 
 # get the code from the repository
 git clone https://github.com/BristolTopGroup/AnalysisSoftware.git BristolAnalysis/Tools
+cd BristolAnalysis/Tools
 
 # get submodules:
 git submodule init && git submodule update
-
+cd -
+ln -s BristolAnalysis/Tools/external/TopQuarkAnalysis TopQuarkAnalysis
 # compile
 scram b -j2
 
 hash -r #or rehash in case that BAT cannot be found
 
 # test run the code:
-BAT_Tests
+#../tmp/slc6_amd64_gcc491/src/BristolAnalysis/Tools/test/BAT_Tests/BAT_Tests
 nohup BAT BristolAnalysis/Tools/python/test_cfg.py &> test.log &
 ```
 

python/DataSetInfo_PHYS14.py python/DataSetInfo_13TeV.pypython/DataSetInfo_PHYS14.py renamed to python/DataSetInfo_13TeV.py

@@ -58,6 +58,11 @@ def getAnalysisSettings(analysisMode):
 
 
 #config start
+#number of events to be processed
+maxEvents = 0# 0 == all
+if os.environ.has_key('maxEvents'):
+    maxEvents = int(os.environ['maxEvents'])
+
 toolsFolder = 'BristolAnalysis/Tools/'
 if os.environ.has_key('toolsFolder'):
     toolsFolder = os.environ['toolsFolder']
@@ -124,9 +129,6 @@ def getAnalysisSettings(analysisMode):
 for setting,value in settings.iteritems():
     print setting, '=', value
 
-#number of events to be processed
-maxEvents = 0# 0 == all
-
 #Jet Energy Resolutions files (L7 corrections)
 bJetResoFile = toolsFolder + "data/bJetReso.root"
 lightJetResoFile = toolsFolder + "data/lightJetReso.root"
@@ -158,7 +160,7 @@ def getAnalysisSettings(analysisMode):
 #file with information (cross-section, number of processed events) for event weight calculation
 datasetInfoFile = ""
 if centerOfMassEnergy == 13:
-    datasetInfoFile = toolsFolder + "python/DataSetInfo_PHYS14.py"
+    datasetInfoFile = toolsFolder + "python/DataSetInfo_13TeV.py"
 
 
 nTuple_version = 0

python/master_PHYS14_cfg.py python/master_2015_cfg.pypython/master_PHYS14_cfg.py renamed to python/master_2015_cfg.py

@@ -5,13 +5,45 @@
 
 #center of mass energy: 7TeV for 2010/2011 data/MC, 8TeV for 2012 data
 #this value will be part of the output file name: DataType_CenterOfMassEnergyTeV_lumipb-1_....
-centerOfMassEnergy = 8
+centerOfMassEnergy = 13
 nTuple_version = 0
 #number of events to be processed
 maxEvents = 100000
 verbose = True
 
-if centerOfMassEnergy == 8:
+if centerOfMassEnergy == 13:
+    lumi = 5000.#pb-1
+    PUFile = 'noFile.root'
+    #+5%
+#    PUFile = toolsFolder + "data/PileUp_2012_72765_truth_finebin.root"
+    #-5%
+#    PUFile = toolsFolder + "data/PileUp_2012_65835_truth_finebin.root"
+
+    #apply the met corrections
+    applyMetSysShiftCorr = False
+    applyMetType0Corr = False
+
+    #Apply Jet Smearing
+    applyJetSmearing = False
+    JetSmearingSystematic = 0
+
+    #Apply Top Pt Reweighting
+    applyTopPtReweighting = False
+
+    #Lepton Scale Factors
+    ElectronScaleFactorSystematic = 0
+    MuonScaleFactorSystematic = 0
+
+    getMuonScaleFactorsFromFile = False
+    MuonScaleFactorsFile = toolsFolder + ""
+
+    getElectronScaleFactorsFromFile = False
+    ElectronIdIsoScaleFactorsFile = 'noFile.root'
+    ElectronTriggerScaleFactorsFile = 'noFile.root'
+
+    getHadronTriggerFromFile = False
+    hadronTriggerFile = 'noFile.root'
+elif centerOfMassEnergy == 8:
     #File for pile-up re-weighting
     #integrated luminosity the MC simulation will be scaled to
     lumi = 19584#pb-1
@@ -93,7 +125,7 @@
 useHitFit = False
 produceFitterASCIIoutput = False
 inputFiles = [
-    '/storage/ec6821/NTupleProd/CMSSW_7_2_3/src/ntuple_TTJets_madgraph.root'     # 53X 8TeV data
+    '/hdfs/TopQuarkGroup/run2/ntuples/v18/TTJets_Madgraph_PU30bx50/ntuple_merged_001.root'     # 74X 13TeV MC
               ]
 
 #relative Path from calling BAT to the TopQuarkAnalysis folder

python/test_cfg.py

@@ -330,7 +330,7 @@ HitFitAnalyser::HitFitAnalyser(boost::shared_ptr<HistogramManager> histMan, cons
 		outFile(outFileName.c_str()), //
 		// The following five initializers read the config parameters for the
 		// ASCII text files which contains the physics object resolutions.
-		FitterPath_("./"), //
+		FitterPath_(Globals::TQAFPath), //
 		hitfitDefault_(FitterPath_ + "TopQuarkAnalysis/TopHitFit/data/setting/RunHitFitConfiguration.txt"), //
 		hitfitElectronResolution_(
 				FitterPath_ + "TopQuarkAnalysis/TopHitFit/data/resolution/tqafElectronResolution.txt"), //

src/Analysers/HitFitAnalyser.cpp

@@ -430,7 +430,6 @@ void Event::setPassesMuonQCDSelection( bool passesMuonQCDSelection ) {
 
 void Event::setPassOfflineSelectionInfo( std::vector<unsigned int> passSelections ) {
 	if ( passSelections.size() > 1 ) {
-		cout << "SHIT PANIC" << endl;
 		for ( unsigned int selection = 0; selection < passSelections.size(); ++selection ) {
 			if ( passSelections[selection] != 2 && passSelections[selection] != 4 )
 				cout << selection << " " << passSelections[selection] << endl;