Merge pull request #271 from CABLE-LSM/270-switch-to-src-layout

Switch to src layout

Author: SeanBryan51

.github/workflows/ci.yaml

@@ -31,6 +31,11 @@ jobs:
       - name: Test with pytest
         run: |
           conda install pytest-cov
+          pytest
+      - name: Generate coverage reports
+        run: |
+          conda remove --force benchcab
+          pip install -e .
           pytest --cov=./ --cov-report=xml
       - name: Upload coverage reports to Codecov
         uses: codecov/codecov-action@v3

setup.cfg

@@ -16,7 +16,25 @@ console_scripts =
     benchcab=benchcab.main:main
 
 [tool:pytest]
-addopts = --doctest-modules --doctest-glob='*.rst' --ignore setup.py --ignore conftest.py --ignore docs/conf.py
+testpaths = tests
+addopts =
+    --doctest-modules
+    --doctest-glob='*.rst'
+    --ignore setup.py
+    --ignore conftest.py
+    --ignore docs/conf.py
+    --import-mode=importlib
+
+[coverage:report]
+include = src/*
+
+[options]
+package_dir=
+    =src
+packages=find:
+
+[options.packages.find]
+where=src
 
 [options.package_data]
 benchcab =