Initial commit

Author: afmagee42

.github/ISSUE_TEMPLATE/bug_report.md

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+---
+name: Bug report
+about: Create a report to help us improve
+title: ''
+labels: ''
+assignees: ''
+
+---
+
+**Describe the bug**
+A clear and concise description of what the bug is.
+
+**To Reproduce**
+Steps to reproduce the behavior:
+1. Go to '...'
+2. Click on '....'
+3. Scroll down to '....'
+4. See error
+
+**Expected behavior**
+A clear and concise description of what you expected to happen.
+
+**Screenshots**
+If applicable, add screenshots to help explain your problem.
+
+**Desktop (please complete the following information):**
+ - OS: [e.g. iOS]
+ - Browser [e.g. chrome, safari]
+ - Version [e.g. 22]
+
+**Smartphone (please complete the following information):**
+ - Device: [e.g. iPhone6]
+ - OS: [e.g. iOS8.1]
+ - Browser [e.g. stock browser, safari]
+ - Version [e.g. 22]
+
+**Additional context**
+Add any other context about the problem here.

.github/ISSUE_TEMPLATE/feature_request.md

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+---
+name: Feature request
+about: Suggest an idea for this project
+title: ''
+labels: ''
+assignees: ''
+
+---
+
+**Is your feature request related to a problem? Please describe.**
+A clear and concise description of what the problem is. Ex. I'm always frustrated when [...]
+
+**Describe the solution you'd like**
+A clear and concise description of what you want to happen.
+
+**Describe alternatives you've considered**
+A clear and concise description of any alternative solutions or features you've considered.
+
+**Additional context**
+Add any other context or screenshots about the feature request here.

.github/ISSUE_TEMPLATE/scientific-improvement.md

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+---
+name: Scientific improvement
+about: Suggest a way to improve an existing tool or pipeline
+title: ''
+labels: ''
+assignees: ''
+
+---
+
+## Describe the improvement that needs to be made
+(e.g. update a parameter estimate, tweak the prior, modify the model)
+
+## Provide links to references to methods or data sources
+
+## Describe the changes expected to the model's outputs
+
+## Suggest new tests that will need to be implemented

.github/actions/pre-commit/action.yaml

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+name: pre-commit
+description: run pre-commit
+inputs:
+  extra_args:
+    description: options to pass to pre-commit run
+    required: false
+    default: '--all-files'
+runs:
+  using: composite
+  steps:
+  - run: python -m pip install pre-commit
+    shell: bash
+  - run: python -m pip freeze --local
+    shell: bash
+  - uses: actions/cache@v4
+    with:
+      path: |
+        ~/.cache/pre-commit
+        ~/.cache/R/renv
+      key: pre-commit-3|${{ env.pythonLocation }}|${{ hashFiles('.pre-commit-config.yaml') }}
+  - run: pre-commit run --show-diff-on-failure --color=always ${{ inputs.extra_args }}
+    shell: bash

.github/workflows/pre-commit.yaml

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+name: pre-commit
+
+on:
+  pull_request:
+  push:
+    branches: [main]
+
+jobs:
+  pre-commit:
+    runs-on: ubuntu-latest
+    steps:
+    - uses: actions/checkout@v4
+    - uses: actions/setup-python@v5
+    - uses: ./.github/actions/pre-commit