diff --git a/.gitignore b/.gitignore index 92412432..63fd5b39 100644 --- a/.gitignore +++ b/.gitignore @@ -1,6 +1,6 @@ .vs .vscode - +local.settings.* ## Ignore Visual Studio temporary files, build results, and diff --git a/README.md b/README.md index 2dc5058b..eede3701 100644 --- a/README.md +++ b/README.md @@ -1,25 +1,18 @@ -# CDCgov GitHub Organization Open Source Project Template +# CDC Data Exchange (DEX) FHIR -**Template for clearance: This project serves as a template to aid projects in starting up and moving through clearance procedures. To start, create a new repository and implement the required [open practices](open_practices.md), train on and agree to adhere to the organization's [rules of behavior](rules_of_behavior.md), and [send a request through the create repo form](https://forms.office.com/Pages/ResponsePage.aspx?id=aQjnnNtg_USr6NJ2cHf8j44WSiOI6uNOvdWse4I-C2NUNk43NzMwODJTRzA4NFpCUk1RRU83RTFNVi4u) using language from this template as a Guide.** - -**General disclaimer** This repository was created for use by CDC programs to collaborate on public health related projects in support of the [CDC mission](https://www.cdc.gov/about/organization/mission.htm). GitHub is not hosted by the CDC, but is a third party website used by CDC and its partners to share information and collaborate on software. CDC use of GitHub does not imply an endorsement of any one particular service, product, or enterprise. - -## Access Request, Repo Creation Request - -* [CDC GitHub Open Project Request Form](https://forms.office.com/Pages/ResponsePage.aspx?id=aQjnnNtg_USr6NJ2cHf8j44WSiOI6uNOvdWse4I-C2NUNk43NzMwODJTRzA4NFpCUk1RRU83RTFNVi4u) _[Requires a CDC Office365 login, if you do not have a CDC Office365 please ask a friend who does to submit the request on your behalf. If you're looking for access to the CDCEnt private organization, please use the [GitHub Enterprise Cloud Access Request form](https://forms.office.com/Pages/ResponsePage.aspx?id=aQjnnNtg_USr6NJ2cHf8j44WSiOI6uNOvdWse4I-C2NUQjVJVDlKS1c0SlhQSUxLNVBaOEZCNUczVS4u).]_ +## Overview -## Related documents +FHIR Server, systems, and resources for the CDC Data Exchange FHIR. -* [Open Practices](open_practices.md) -* [Rules of Behavior](rules_of_behavior.md) -* [Thanks and Acknowledgements](thanks.md) -* [Disclaimer](DISCLAIMER.md) -* [Contribution Notice](CONTRIBUTING.md) -* [Code of Conduct](code-of-conduct.md) +## Content -## Overview +`/source` - source code for: +- process event +- process export +- process message +- shared code -Describe the purpose of your project. Add additional sections as necessary to help collaborators and potential collaborators understand and use your project. +`/spikes` - conectathons, exploratory developments spikes, archive. ## Public Domain Standard Notice This repository constitutes a work of the United States Government and is not diff --git a/source/terraform/README.txt b/source/terraform/README.txt deleted file mode 100644 index 0081e4a6..00000000 --- a/source/terraform/README.txt +++ /dev/null @@ -1 +0,0 @@ -IaC source code here \ No newline at end of file diff --git a/source/CDC.DEX.FHIR.Logic/README.txt b/spikes/CDC.DEX.FHIR.Logic/README.txt similarity index 100% rename from source/CDC.DEX.FHIR.Logic/README.txt rename to spikes/CDC.DEX.FHIR.Logic/README.txt diff --git a/source/CDC.DEX.FHIR.Logic/connections.json b/spikes/CDC.DEX.FHIR.Logic/connections.json similarity index 100% rename from source/CDC.DEX.FHIR.Logic/connections.json rename to spikes/CDC.DEX.FHIR.Logic/connections.json diff --git a/source/CDC.DEX.FHIR.Logic/fhirDataExporter/workflow.json b/spikes/CDC.DEX.FHIR.Logic/fhirDataExporter/workflow.json similarity index 100% rename from source/CDC.DEX.FHIR.Logic/fhirDataExporter/workflow.json rename to spikes/CDC.DEX.FHIR.Logic/fhirDataExporter/workflow.json diff --git a/source/CDC.DEX.FHIR.Logic/host.json b/spikes/CDC.DEX.FHIR.Logic/host.json similarity index 100% rename from source/CDC.DEX.FHIR.Logic/host.json rename to spikes/CDC.DEX.FHIR.Logic/host.json diff --git a/source/CDC.DEX.FHIR.Logic/parameters.json b/spikes/CDC.DEX.FHIR.Logic/parameters.json similarity index 100% rename from source/CDC.DEX.FHIR.Logic/parameters.json rename to spikes/CDC.DEX.FHIR.Logic/parameters.json diff --git a/source/connectathon/README.txt b/spikes/connectathon33/README.txt similarity index 100% rename from source/connectathon/README.txt rename to spikes/connectathon33/README.txt diff --git a/source/connectathon/TEST-survey-with-multiple-fhir-resources.json b/spikes/connectathon33/TEST-survey-with-multiple-fhir-resources.json similarity index 100% rename from source/connectathon/TEST-survey-with-multiple-fhir-resources.json rename to spikes/connectathon33/TEST-survey-with-multiple-fhir-resources.json diff --git a/spikes/connectathon33/flu-serve-bundle-comparison/0f90690d-8901-4f07-990a-e8d0ae64dee9_after_need_to_find_original.json b/spikes/connectathon33/flu-serve-bundle-comparison/0f90690d-8901-4f07-990a-e8d0ae64dee9_after_need_to_find_original.json new file mode 100644 index 00000000..78cc78cd --- /dev/null +++ b/spikes/connectathon33/flu-serve-bundle-comparison/0f90690d-8901-4f07-990a-e8d0ae64dee9_after_need_to_find_original.json @@ -0,0 +1,17066 @@ +{ + "resourceType": "Bundle", + "id": "0f90690d-8901-4f07-990a-e8d0ae64dee9", + "meta": { + "versionId": "1", + "lastUpdated": "2023-05-06T19:35:18.476+00:00", + "profile": [ + "http://hl7.org/fhir/us/medmorph/StructureDefinition/us-ph-content-bundle" + ] + }, + "type": "collection", + "timestamp": "2023-05-06T19:35:14.301+00:00", + "entry": [ + { + "fullUrl": "https://gw.interop.community/Adams4Saffron/data/Observation/319760", + "resource": { + "resourceType": "Observation", + "id": "319760", + "meta": { + "versionId": "1", + "lastUpdated": "2023-04-05T01:06:37+00:00", + "source": "#xmGDaP7K69Q2TvpC" + }, + "text": { + "status": "generated", + "div": "
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See the License for the specific language governing permissions and limitations under the License." + }, + { + "url": "http://build.fhir.org/ig/HL7/davinci-crd/R4/ext-insurance.html", + "valueReference": { + "reference": "Coverage/662621", + "display": "Beatrice Farmer Mason Coverage" + } + } + ], + "identifier": [ + { + "use": "official", + "system": "http://mihin.org/fhir/sid/elementId", + "value": "6a8f1324-210e-4cd0-ac33-b7ece450030e" + } + ], + "status": "active", + "intent": "order", + "medicationCodeableConcept": { + "coding": [ + { + "system": "http://www.nlm.nih.gov/research/umls/rxnorm", + "code": "854235", + "display": "0.4 ML Enoxaparin sodium 100 MG/ML Prefilled Syringe" + } + ] + }, + "subject": { + "reference": "Patient/22781", + "display": "Beatrice Farmer Mason" + }, + "encounter": { + "reference": "Encounter/735049", + "display": "admission [Hospital Inpatient Admission [Encounter]]" + }, + "authoredOn": "2020-04-16T11:22:00+00:00", + "requester": { + "reference": "Practitioner/19831", + "identifier": { + "system": "http://hl7.org/fhir/sid/us-npi", + "value": "9999999177" + }, + "display": "Vernon Terrell Mosley MD" + }, + "insurance": [ + { + "reference": "Coverage/662621", + "display": "Beatrice Farmer Mason Coverage" + } + ] + } + } + ] +} \ No newline at end of file diff --git a/spikes/connectathon33/flu-serve-bundle-comparison/8cde74ac-229d-4f7c-8067-da770a53fa95_comp_bundles.PNG b/spikes/connectathon33/flu-serve-bundle-comparison/8cde74ac-229d-4f7c-8067-da770a53fa95_comp_bundles.PNG new file mode 100644 index 00000000..fc9dd17f Binary files /dev/null and b/spikes/connectathon33/flu-serve-bundle-comparison/8cde74ac-229d-4f7c-8067-da770a53fa95_comp_bundles.PNG differ diff --git a/spikes/connectathon33/flu-serve-bundle-comparison/8cde74ac-229d-4f7c-8067-da770a53fa95_comp_responses.PNG b/spikes/connectathon33/flu-serve-bundle-comparison/8cde74ac-229d-4f7c-8067-da770a53fa95_comp_responses.PNG new file mode 100644 index 00000000..79d68c88 Binary files /dev/null and b/spikes/connectathon33/flu-serve-bundle-comparison/8cde74ac-229d-4f7c-8067-da770a53fa95_comp_responses.PNG differ diff --git a/spikes/connectathon33/flu-serve-bundle-comparison/readme.md b/spikes/connectathon33/flu-serve-bundle-comparison/readme.md new file mode 100644 index 00000000..93435e9f --- /dev/null +++ b/spikes/connectathon33/flu-serve-bundle-comparison/readme.md @@ -0,0 +1,38 @@ +# Comparison Summary + +Bundles were submitted to FHIR Server $Bundle for responses. + +--- + +## Operation Outcome, **Error** + +Bundles were rejected. + +| Bundle | OperationOutcome | +| --------------------------------- | --------------------------------- | +| 39bcc20c-85c5-41ba-b080-560aef1190ae | Asked to deserialize unknown type 'Leslyn' | +| 782e4762-f95c-46de-be4e-aea6e7b0198a | Encountered unknown element 'resourcexyz' | +| 815f0ee8-3d9a-4805-acf7-a3ce406587fa | Literal '2020-03-2415:00:00+00:00' cannot be parsed as a dateTime | +| 815f0ee8-3d9a-4805-acf7-a3ce406587fa | Asked to deserialize unknown type 'Medrequest' | + +--- + +## Operation Outcome, **No Error** + +Bundles were accepted. + +| Bundle | Change Detail | +| --------------------------------- | --------------------------------- | +| 5b507b02-ef88-4a15-9a70-131950b41202 | system/code display change | +| 8cde74ac-229d-4f7c-8067-da770a53fa95 | resourceType Encounter deleted | +| 66d6ad4a-9bbd-4b1b-b3bf-4b050ea27796 | system code changed from numeric to name 'Leslyn' | +| 782e4762-f95c-46de-be4e-aea6e7b0198a | resourceType Patient deleted | +| 68082e1f-64c8-4962-a2a8-d0f2b84337d9 | encounter reference deleted | +| 87584a2d-1741-4e08-b93d-3bf39fb02585 | system codes and practitioner reference changes | +| 3814394c-86ec-4944-9411-4b7e946f0f4a | two resourceType Immunization deleted | +| 37214310-4dd6-47b9-b427-cacb5f4ee7e8 | code, vaccineCode (multiple), reasonCode delete | + +## Notes + +- Full details in bundle files: before, after, before_response, after_response, and some saved pics of the comparison. +- Bundle text difference was compared with VS Code, select 2 files, right click, Compare Selected. \ No newline at end of file diff --git a/source/terraform/DEX_FHIR_APIM.openapi.yaml b/spikes/terraform/DEX_FHIR_APIM.openapi.yaml similarity index 100% rename from source/terraform/DEX_FHIR_APIM.openapi.yaml rename to spikes/terraform/DEX_FHIR_APIM.openapi.yaml diff --git a/spikes/terraform/README.txt b/spikes/terraform/README.txt new file mode 100644 index 00000000..3506a781 --- /dev/null +++ b/spikes/terraform/README.txt @@ -0,0 +1 @@ +IaC source code in repo: CDCEnt, data-exchange-fhir-infra. \ No newline at end of file