Attribute error in TES

[micoleaoo]

Galaxy job failed in the TESJobRunner due to AttributeError: 'HierarchicalObjectStore' object has no attribute 'file_path'

File "/srv/galaxy/server/lib/galaxy/jobs/runners/__init__.py", line 177, in run_next
     method(arg)

File "/srv/galaxy/server/lib/galaxy/jobs/runners/tes.py", line 371, in queue_job
    job_script = self.build_script(job_wrapper, client_args)
                 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/srv/galaxy/server/lib/galaxy/jobs/runners/tes.py", line 299, in build_script
    object_store_path = job_wrapper.object_store.file_path
                        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^

The code was functional on local installation of Galaxy

Temporary fix:
BorisYourich/galaxy
*copy and open link in new window

[martenson]

Am I correct in assuming you only tested this with the default object store configuration before? In which case this is likely relevant: https://github.com/galaxyproject/galaxy/blob/2244b9972c6464ca96dfb9cfaef956e4bb9b5a63/lib/galaxy/config/sample/object_store_conf.sample.yml#L30-L31

As I read this you were relying on file_path, but that does not exist on object stores. It worked for you likely because incidentally the default object store uses that value to bootstrap the config.