WIP: Roihu updates to Docs CSC

[rkronberg]

Proposed changes

1. Identify pages to update, add or deprecate.
2. Assign owners.
3. More urgent updates can be done via separate PRs.

https://csc-guide-preview.2.rahtiapp.fi/origin/roihu/

New pages

See #2606

Existing pages to check & update

The following pages mention either Puhti, Mahti or both.

• docs/computing/usage-policy.md
• docs/computing/hpc-libraries.md
• docs/computing/disk.md
• docs/computing/connecting/index.md
• docs/computing/connecting/ssh-keys.md
• docs/computing/connecting/ssh-unix.md
• docs/computing/connecting/ssh-windows.md
• docs/computing/systems-mahti.md
• docs/computing/index.md
• docs/computing/systems-roihu.md
• docs/computing/lustre.md
• docs/computing/running/example-job-scripts-puhti.md
• docs/computing/running/interactive-usage.md
• docs/computing/running/performance-checklist.md
• docs/computing/running/throughput.md
• docs/computing/running/example-job-scripts-mahti.md
• docs/computing/running/fireworks.md
• docs/computing/running/creating-job-scripts-mahti.md
• docs/computing/running/getting-started.md
• docs/computing/running/array-jobs.md
• docs/computing/running/creating-job-scripts-puhti.md
• docs/computing/running/submitting-jobs.md
• docs/computing/running/batch-job-partitions.md
• docs/computing/allas.md
• docs/computing/hpc-billing.md
• docs/computing/lumi-vs-mahti.md
• docs/computing/performance.md
• docs/computing/systems-puhti.md
• docs/computing/quantum-computing/kvasi/kvasi.md
• docs/computing/compiling-puhti.md
• docs/computing/containers/creating.md
• docs/computing/containers/tykky.md
• docs/computing/containers/run-existing.md
• docs/computing/webinterface/connecting.md
• docs/computing/webinterface/julia-on-jupyter.md
• docs/computing/webinterface/matlab.md
• docs/computing/webinterface/index.md
• docs/computing/webinterface/jupyter.md
• docs/computing/webinterface/jupyter-for-courses.md
• docs/computing/webinterface/desktop.md
• docs/computing/webinterface/vscode.md
• docs/computing/webinterface/accelerated-visualization.md
• docs/computing/webinterface/project-view.md
• docs/computing/webinterface/file-browser.md
• docs/computing/installing.md
• docs/computing/compiling-mahti.md
• docs/computing/available-systems.md
• docs/support/wn/training-new.md
• docs/support/wn/apps-new.md
• docs/support/wn/comp-new.md
• docs/support/support-howto.md
• docs/support/faq/x11-graphics.md
• docs/support/faq/database.md
• docs/support/faq/how-to-get-puhti-access.md
• docs/support/faq/is-it-possible-to-move-data-in-allas-to-new-project.md
• docs/support/faq/how-to-move-data-between-puhti-and-allas.md
• docs/support/faq/how-do-the-project-file-permissions-work.md
• docs/support/faq/index.md
• docs/support/faq/disk-quota-exceeded.md
• docs/support/faq/where-should-i-put-my-data.md
• docs/support/faq/local_scratch_for_data_processing.md
• docs/support/faq/when-will-my-job-run.md
• docs/support/faq/ssh-keys-not-working.md
• docs/support/faq/how-to-access-home-wrkdir-projdir-from-cpouta.md
• docs/support/faq/how-fast-is-the-pouta-network.md
• docs/support/faq/i-cannot-login.md
• docs/support/faq/how-much-memory-my-job-needs.md
• docs/support/faq/why-does-my-batch-job-fail.md
• docs/support/faq/who-unknown-is-using-our-resources.md
• docs/support/faq/python-package-trouble.md
• docs/support/faq/how-can-i-change-billing-project.md
• docs/support/archives/puhti-users.md
• docs/support/archives/mahti-users.md
• docs/support/training-material/geocomputing-seminars.md
• docs/support/training-material/geocomputing-learning-materials.md
• docs/support/tutorials/nextflow-tutorial.md
• docs/support/tutorials/power-maestro.md
• docs/support/tutorials/ml-multi.md
• docs/support/tutorials/ml-llm.md
• docs/support/tutorials/gpu-shape.md
• docs/support/tutorials/hpc-quick.md
• docs/support/tutorials/clean-up-data.md
• docs/support/tutorials/lustre_performance.md
• docs/support/tutorials/python-usage-guide.md
• docs/support/tutorials/biojobs-on-puhti.md
• docs/support/tutorials/index.md
• docs/support/tutorials/ml-data.md
• docs/support/tutorials/bioapplications-puhti.md
• docs/support/tutorials/da-guide.md
• docs/support/tutorials/gpu-ml.md
• docs/support/tutorials/hyperparameter_search.md
• docs/support/tutorials/lue.md
• docs/support/tutorials/gromacs-throughput.md
• docs/support/tutorials/student_quick.md
• docs/support/tutorials/user-spack.md
• docs/support/tutorials/singularity-scratch.md
• docs/support/tutorials/remote-dev.md
• docs/support/tutorials/MaxQuant-tutorial.md
• docs/support/tutorials/bioconda-tutorial.md
• docs/support/tutorials/many.md
• docs/support/tutorials/parallel-r.md
• docs/support/tutorials/gabedit_gaussian.md
• docs/support/tutorials/ml-workflows.md
• docs/support/tutorials/gis/eo_guide.md
• docs/support/tutorials/gis/gdal.md
• docs/support/tutorials/gis/virtual-rasters.md
• docs/support/tutorials/julia.md
• docs/support/tutorials/cmdline-handson.md
• docs/support/tutorials/env-guide/index.md
• docs/support/tutorials/env-guide/using-linux-in-command-line.md
• docs/support/tutorials/env-guide/packing-and-compression-tools.md
• docs/support/tutorials/env-guide/more-commands-for-managing-files.md
• docs/support/tutorials/rstudio-or-jupyter-notebooks.md
• docs/support/tutorials/snakemake-puhti.md
• docs/support/tutorials/ml-starting.md
• docs/support/tutorials/dask-python.md
• docs/support/tutorials/using_csc_env.md
• docs/support/tutorials/ml-guide.md
• docs/support/contact.md
• docs/img/namd-gpu.svg
• docs/img/namd-scaling.svg
• docs/img/csc-quick-reference/csc-quick-reference.tex
• docs/index.md
• docs/cloud/dbaas/firewalls.md
• docs/cloud/dbaas/mariadb-accessing.md
• docs/cloud/dbaas/postgres-accessing.md
• docs/cloud/pouta/vm-flavors-and-billing.md
• docs/cloud/rahti/tutorials/connect-database-hpc.md
• docs/cloud/rahti/access.md
• docs/data/moving/funet.md
• docs/data/moving/scp.md
• docs/data/moving/tar_ssh.md
• docs/data/moving/copy_allas_ida.md
• docs/data/moving/web-interface.md
• docs/data/moving/rsync.md
• docs/data/moving/graphical_transfer.md
• docs/data/moving/disk_mount.md
• docs/data/datasets/sourcing-datasets.md
• docs/data/datasets/hosting-datasets-at-CSC.md
• docs/data/datasets/spatial-data-in-csc-computing-env.md
• docs/data/Allas/allas_lumi.md
• docs/data/Allas/allas-examples.md
• docs/data/Allas/index.md
• docs/data/Allas/allas_batchjobs.md
• docs/data/Allas/introduction.md
• docs/data/Allas/accessing_allas.md
• docs/data/Allas/using_allas/rclone.md
• docs/data/Allas/using_allas/a_commands.md
• docs/data/Allas/using_allas/common_use_cases.md
• docs/data/Allas/using_allas/python_boto3.md
• docs/data/Allas/using_allas/swift_client.md
• docs/data/Allas/using_allas/rclone_local.md
• docs/data/Allas/using_allas/s3_client.md
• docs/data/Allas/allas_encryption.md
• docs/data/Allas/allas-nextcloud.md
• docs/data/Allas/allas_project_example.md
• docs/data/sensitive-data/sd-connect-command-line-interface.md
• docs/data/sensitive-data/sd-connect-sharing-for-import.md
• docs/data/sensitive-data/sequencing_center_tutorial.md
• docs/data/sensitive-data/sd-connect-and-a-commands.md
• docs/data/sensitive-data/sd-desktop-working.md
• docs/data/sensitive-data/sd-desktop-secondary-working.md
• docs/data/sensitive-data/sd-desktop-singularity.md
• docs/data/sensitive-data/creating_containers.md
• docs/data/kaivos/kaivos_perl.md
• docs/data/kaivos/kaivos-account.md
• docs/data/kaivos/kaivos_client_in_puhti.md
• docs/data/kaivos/kaivos_batch_job.md
• docs/data/kaivos/overview.md
• docs/data/kaivos/kaivos_remote.md
• docs/data/ida/using_ida.md
• docs/apps/julia-jupyter.md
• docs/apps/exonerate.md
• docs/apps/starccm+.md
• docs/apps/blast.md
• docs/apps/raxml.md
• docs/apps/spades.md
• docs/apps/bioconda.md
• docs/apps/biopython.md
• docs/apps/macs2.md
• docs/apps/ipyrad.md
• docs/apps/bamtools.md
• docs/apps/comsol.md
• docs/apps/cuda-gdb.md
• docs/apps/grass.md
• docs/apps/cutadapt.md
• docs/apps/roary.md
• docs/apps/krona.md
• docs/apps/seismic-unix.md
• docs/apps/snakemake.md
• docs/apps/saga-gis.md
• docs/apps/cp2k.md
• docs/apps/csd.md
• docs/apps/r-env.md
• docs/apps/cloudcompare.md
• docs/apps/cProfile.md
• docs/apps/structure.md
• docs/apps/bowtie2.md
• docs/apps/freebayes.md
• docs/apps/tophat.md
• docs/apps/qe.md
• docs/apps/otb.md
• docs/apps/braker.md
• docs/apps/scalasca.md
• docs/apps/matlab.md
• docs/apps/orca.md
• docs/apps/gpaw.md
• docs/apps/ames-stereo.md
• docs/apps/bayescan.md
• docs/apps/paraview.md
• docs/apps/pannzer.md
• docs/apps/alphafold.md
• docs/apps/fastqc.md
• docs/apps/maestro.md
• docs/apps/vtune.md
• docs/apps/geoconda.md
• docs/apps/seqtk.md
• docs/apps/chipster_genomes.md
• docs/apps/bioperl.md
• docs/apps/bs.md
• docs/apps/gaussian.md
• docs/apps/compute-san.md
• docs/apps/jupyter.md
• docs/apps/opendronemap.md
• docs/apps/diamond.md
• docs/apps/minimap2.md
• docs/apps/sofi3d.md
• docs/apps/namd.md
• docs/apps/itac.md
• docs/apps/pytorch.md
• docs/apps/rstudio.md
• docs/apps/jupyter-for-courses.md
• docs/apps/openbabel.md
• docs/apps/prokka.md
• docs/apps/lammps.md
• docs/apps/desktop.md
• docs/apps/ams.md
• docs/apps/trimmomatic.md
• docs/apps/plumed.md
• docs/apps/by_discipline.md
• docs/apps/emboss.md
• docs/apps/whiteboxtools.md
• docs/apps/gdal.md
• docs/apps/by_system.md
• docs/apps/lazypipe.md
• docs/apps/molden.md
• docs/apps/nwchem.md
• docs/apps/cd-hit.md
• docs/apps/tensorboard.md
• docs/apps/xhmm.md
• docs/apps/sen2mosaic.md
• docs/apps/gromacs.md
• docs/apps/nomachine.md
• docs/apps/gold.md
• docs/apps/cosmors.md
• docs/apps/pdal.md
• docs/apps/qiskit.md
• docs/apps/vscode.md
• docs/apps/mothur.md
• docs/apps/tensorflow.md
• docs/apps/abaqus.md
• docs/apps/vmd.md
• docs/apps/gdb.md
• docs/apps/zonation.md
• docs/apps/tmolex.md
• docs/apps/humann.md
• docs/apps/interpro.md
• docs/apps/sen2cor.md
• docs/apps/rapids.md
• docs/apps/megahit.md
• docs/apps/elmer.md
• docs/apps/jax.md
• docs/apps/ncu.md
• docs/apps/visit.md
• docs/apps/octave.md
• docs/apps/bwa.md
• docs/apps/ansys.md
• docs/apps/star.md
• docs/apps/vasp.md
• docs/apps/accelerated-visualization.md
• docs/apps/palm.md
• docs/apps/hmmer.md
• docs/apps/cryosparc.md
• docs/apps/ddt.md
• docs/apps/python.md
• docs/apps/mira.md
• docs/apps/sagemath.md
• docs/apps/ams-gui.md
• docs/apps/wtdbg2.md
• docs/apps/python-data.md
• docs/apps/trinity.md
• docs/apps/samtools.md
• docs/apps/velvet.md
• docs/apps/nsys.md
• docs/apps/nvprof.md
• docs/apps/stacks.md
• docs/apps/julia.md
• docs/apps/r-env-for-gis.md
• docs/apps/salmon.md
• docs/apps/hyperqueue.md
• docs/apps/qgis.md
• docs/apps/molpro.md
• docs/apps/edirect.md
• docs/apps/metaphlan.md
• docs/apps/pcl.md
• docs/apps/turbomole.md
• docs/apps/openfoam.md
• docs/apps/kraken.md
• docs/apps/blender.md
• docs/apps/snap.md
• docs/apps/picard.md
• docs/apps/lastools.md
• docs/apps/qiime.md
• docs/apps/mrbayes.md
• docs/apps/amber.md
• docs/apps/force.md
• docs/apps/virusdetect.md
• docs/apps/arcgis.md
• docs/apps/pdb.md
• docs/apps/idl.md
• docs/apps/nextflow.md
• docs/apps/grace.md
• docs/accounts/fmi.md
• docs/accounts/how-to-increase-disk-quotas.md
• docs/accounts/how-to-add-service-access-for-project.md
• docs/accounts/index.md
• docs/accounts/how-to-manage-your-project.md
• docs/accounts/billing.md
• docs/accounts/how-to-access-mahti-large-partition.md
• docs/accounts/mfa.md

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