neighboursWithFoci.m

function cellProps = neighboursWithFoci(cellProps)

% Copyright (C) 2013-2014 University of Dundee & Open Microscopy Environment.
% All rights reserved.
% 
% This program is free software; you can redistribute it and/or modify
% it under the terms of the GNU General Public License as published by
% the Free Software Foundation; either version 2 of the License, or
% (at your option) any later version.
% 
% This program is distributed in the hope that it will be useful,
% but WITHOUT ANY WARRANTY; without even the implied warranty of
% MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
% GNU General Public License for more details.
% 
% You should have received a copy of the GNU General Public License along
% with this program; if not, write to the Free Software Foundation, Inc.,
% 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.

numCells = length(cellProps);
for thisCell = 1:numCells
    numNeighbours = cellProps{thisCell}.numNeighbours;
    neighboursWithFoci = 0;
    perCentWithFoci = 0;
    if numNeighbours > 0
        neighbours = cellProps{thisCell}.neighbours;
        for thisNeighbour = 1:numNeighbours
            neighbourIdx = neighbours(thisNeighbour);
            if cellProps{neighbourIdx}.numFoci > 0
                neighboursWithFoci = neighboursWithFoci + 1;
            end
        end
        perCentWithFoci = (neighboursWithFoci/numNeighbours)*100;
    end
    cellProps{thisCell}.neighboursWithFoci = neighboursWithFoci;
    cellProps{thisCell}.perCentNeighboursWithFoci = perCentWithFoci;
end