.travis.yml

branches:
  only:
  - master

sudo: required
latex: false
pandoc: true
warnings_are_errors: false

language: r
cran: http://cran.rstudio.com
r:
  - 4.1.1

cache:
  directories:
  - "$HOME/.local/share/renv"
  - "$TRAVIS_BUILD_DIR/renv/library"
  - "$HOME/.TinyTeX/"

jobs:
  include:
  - name: Moderna CoR Report
    env:
    - REPORT_TYPE=COR
    - TRIAL=moderna_mock
    script:
    - echo "Building correlates of risk report"
    - make cor_report
  - name: Janssen Pooled CoR Report
    env:
    - REPORT_TYPE=COR
    - TRIAL=janssen_pooled_mock
    script:
    - echo "Building correlates of risk report"
    - make cor_report

apt_packages:
  - libxml2-dev
  - libssl-dev
  - libcurl4-openssl-dev

before_install:
  - sudo apt-get install -y texlive-extra-utils ghostscript

install:
  - cd .. && Rscript -e "install.packages(c('here', 'tinytex'))"
  - wget https://cran.r-project.org/src/contrib/Archive/renv/renv_0.14.0.tar.gz
  - R CMD INSTALL renv_0.14.0.tar.gz
  - echo insecure >> ~/.curlrc && Rscript -e "tinytex::install_tinytex(force=TRUE)"
  - export PATH=$HOME/bin:${PATH}
  - cd $TRAVIS_BUILD_DIR && Rscript -e "renv::restore()"

before_script:
  - echo "B <- 5" >> $TRAVIS_BUILD_DIR/cor_coxph/code/params.R
  - echo "numPerm <- 5" >> $TRAVIS_BUILD_DIR/cor_coxph/code/params.R
  - echo "B <- 5" >> $TRAVIS_BUILD_DIR/cor_nonlinear/code/params.R
  - cd $TRAVIS_BUILD_DIR && Rscript -e "renv::status()"
  - cd $TRAVIS_BUILD_DIR && Rscript -e "row.names(installed.packages())"

after_script:
  - chmod +x _deploy_reports.sh && ./_deploy_reports.sh

notifications:
  email:
    on_success: change
    on_failure: always
    recipients:
    - benkeser@emory.edu
    - nh@nimahejazi.org

env:
  global:
  - secure: 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