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README.md

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# Version
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v0.1.0
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v1.1.0
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# Description
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Application to explore the different Schmidtea mediterranea predicted interactomes. Available at [compgen.bio.ub.edu/PlanNET](https://compgen.bio.ub.edu/PlanNET).
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At the [Computational Genomics Lab](https://compgen.bio.ub.edu) we have trained a Random Forest classifier to predict planarian protein-protein interactions by using homology inferences (see [link to the published paper](https://academic.oup.com/bioinformatics/advance-article/doi/10.1093/bioinformatics/btx738/4657068)).
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At the [Computational Genomics Lab](https://compgen.bio.ub.edu) we have trained a Random Forest classifier to predict planarian protein-protein interactions by using homology inferences (see [link to the published paper](https://academic.oup.com/bioinformatics/article/34/6/1016/4657068)).
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To see the code used to predict the planarian networks, go to this [repository](https://github.com/scastlara/PlanNET-software).
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> PlanNET was made using Django (https://www.djangoproject.com/), neo4j (https://neo4j.com/) and cytoscape js (http://js.cytoscape.org/).
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# Cite
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```
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S Castillo-Lara, J F Abril
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S. Castillo-Lara, J.F. Abril
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PlanNET: homology-based predicted interactome for multiple planarian transcriptomes
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Bioinformatics, AOP Nov 24th, 2017, 10.1093/bioinformatics/btx738
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Bioinformatics, Volume 34, Issue 6, 15 March 2018, Pages 1016–1023, btx738
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```
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* [link to the published paper](https://academic.oup.com/bioinformatics/article/34/6/1016/4657068)
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# Copyright
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```
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PlanNET web application to explore the interactomes of Schmidtea mediterranea.

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