Collaborate.qmd

---
title: ""
page-layout: full
---

<style>
/* Modern Collaborators Page Styling */
:root {
  --primary-color: #0a2463; /* Deep blue */
  --secondary-color: #3e92cc; /* Bright blue */
  --accent-color: #d81159; /* Vibrant pink for contrast */
  --gradient: linear-gradient(135deg, var(--primary-color), var(--secondary-color));
  --light-bg: #f8f9fa;
  --card-bg: #ffffff;
  --text-primary: #1a1a2e;
  --text-secondary: #4a4e69;
  --text-light: #6c757d;
  --shadow: 0 10px 30px rgba(0, 0, 0, 0.08);
  --radius: 12px;
  --transition: all 0.3s ease;
}

body {
  background-color: var(--light-bg);
  font-family: 'Segoe UI', sans-serif;
}

/* Custom title styling */
.quarto-title-block .title {
  font-size: 3rem;
  font-weight: 700;
  color: var(--primary-color);
  text-align: center;
  margin-bottom: 4rem;
  position: relative;
  display: inline-block;
  left: 50%;
  transform: translateX(-50%);
}

.quarto-title-block .title::after {
  content: '';
  position: absolute;
  bottom: -15px;
  left: 0;
  width: 100%;
  height: 4px;
  background: var(--gradient);
  border-radius: 2px;
}

/* Banner styling */
.collab-banner {
  background: var(--gradient);
  padding: 3rem 2rem;
  color: white;
  text-align: center;
  border-radius: var(--radius);
  margin-bottom: 4rem;
  position: relative;
  overflow: hidden;
}

.collab-banner::before {
  content: '';
  position: absolute;
  top: 0;
  left: 0;
  width: 100%;
  height: 100%;
  background: linear-gradient(135deg, rgba(255, 255, 255, 0.1), rgba(255, 255, 255, 0.05));
  pointer-events: none;
}

.collab-banner p {
  font-size: 1.2rem;
  max-width: 750px;
  margin: 0 auto;
  line-height: 1.6;
}

/* Section styling */
.collab-section h2 {
  font-size: 2.2rem;
  font-weight: 700;
  color: var(--primary-color);
  text-align: center;
  position: relative;
  margin-top: 4rem;
  margin-bottom: 2.5rem;
  padding-bottom: 1rem;
}

.collab-section h2::after {
  content: '';
  position: absolute;
  bottom: 0;
  left: 50%;
  transform: translateX(-50%);
  width: 80px;
  height: 4px;
  background: var(--gradient);
  border-radius: 2px;
}

.collab-section p.description {
  text-align: center;
  color: var(--text-secondary);
  max-width: 750px;
  margin: 0 auto 2.5rem;
  font-size: 1.1rem;
  line-height: 1.6;
}

/* Collaborator grid */
.collab-grid {
  display: grid;
  grid-template-columns: repeat(auto-fill, minmax(300px, 1fr));
  gap: 2rem;
  margin-bottom: 4rem;
}

.collab-card {
  background: var(--card-bg);
  border-radius: var(--radius);
  overflow: hidden;
  box-shadow: var(--shadow);
  transition: var(--transition);
  height: 100%;
  position: relative;
  border: 1px solid rgba(0, 0, 0, 0.05);
}

.collab-card::before {
  content: '';
  position: absolute;
  top: 0;
  left: 0;
  right: 0;
  height: 0.25rem;
  background: var(--gradient);
  z-index: 1;
}

.collab-card:hover {
  transform: translateY(-10px);
  box-shadow: 0 15px 35px rgba(0, 0, 0, 0.1);
  border-color: var(--secondary-color);
}

.collab-card-content {
  padding: 1.75rem;
}

.collab-card h3 {
  font-size: 1.4rem;
  font-weight: 600;
  color: var(--primary-color);
  margin: 0 0 0.5rem 0;
}

.collab-card h4 {
  font-size: 1rem;
  font-weight: 500;
  color: var(--text-secondary);
  margin: 0 0 0.75rem 0;
}

.collab-card p {
  font-size: 0.95rem;
  color: var(--text-secondary);
  margin: 0.75rem 0 0 0;
  line-height: 1.5;
}

/* Partner Labs */
.labs-grid {
  display: grid;
  grid-template-columns: repeat(auto-fill, minmax(300px, 1fr));
  gap: 2rem;
  margin-bottom: 4rem;
}

.lab-card {
  background: var(--card-bg);
  border-radius: var(--radius);
  padding: 2rem;
  box-shadow: var(--shadow);
  transition: var(--transition);
  position: relative;
  border-left: 0.25rem solid var(--secondary-color);
}

.lab-card:hover {
  transform: translateX(10px);
  box-shadow: 0 15px 35px rgba(0, 0, 0, 0.1);
}

.lab-card h3 {
  font-size: 1.4rem;
  font-weight: 600;
  color: var(--primary-color);
  margin: 0 0 0.5rem 0;
}

.lab-card h4 {
  font-size: 1rem;
  font-weight: 500;
  color: var(--text-secondary);
  margin: 0;
}

/* Consortium styling */
.consortium-container {
  display: flex;
  flex-wrap: wrap;
  gap: 3rem;
  margin: 2rem 0 4rem 0;
}

.consortium-group {
  flex: 1;
  min-width: 300px;
}

.consortium-group h3 {
  font-size: 1.6rem;
  font-weight: 600;
  color: var(--primary-color);
  margin: 0 0 1.5rem 0;
  padding-bottom: 0.75rem;
  border-bottom: 2px solid rgba(0, 0, 0, 0.05);
}

.consortium-list {
  display: flex;
  flex-wrap: wrap;
  gap: 1rem;
}

.consortium-pill {
  background-color: rgba(62, 146, 204, 0.1);
  border-radius: 50px;
  padding: 0.75rem 1.25rem;
  font-size: 0.95rem;
  font-weight: 500;
  color: var(--secondary-color);
  transition: var(--transition);
  box-shadow: 0 4px 10px rgba(0, 0, 0, 0.03);
  display: inline-block;
}

.consortium-pill:hover {
  background-color: var(--secondary-color);
  color: white;
  transform: translateY(-5px);
  box-shadow: 0 10px 20px rgba(0, 0, 0, 0.08);
}

/* CTA Section */
.collab-cta {
  background: var(--card-bg);
  border-radius: var(--radius);
  padding: 3.5rem 2rem;
  text-align: center;
  margin: 3rem 0;
  position: relative;
  box-shadow: var(--shadow);
}

.collab-cta::before {
  content: '';
  position: absolute;
  top: 0;
  left: 0;
  right: 0;
  height: 0.25rem;
  background: var(--gradient);
}

.collab-cta h2 {
  font-size: 2rem;
  font-weight: 700;
  color: var(--primary-color);
  margin-bottom: 1.5rem;
}

.collab-cta p {
  max-width: 650px;
  margin: 0 auto 2rem;
  font-size: 1.1rem;
  line-height: 1.6;
  color: var(--text-secondary);
}

.cta-button {
  display: inline-block;
  background: var(--gradient);
  color: white;
  font-size: 1rem;
  font-weight: 600;
  padding: 1rem 2.5rem;
  border-radius: 50px;
  text-decoration: none;
  transition: var(--transition);
  box-shadow: 0 5px 15px rgba(0, 0, 0, 0.1);
  border: 2px solid var(--secondary-color);
}

.cta-button:hover {
  transform: translateY(-5px);
  box-shadow: 0 10px 25px rgba(0, 0, 0, 0.15);
  background: var(--secondary-color);
  border-color: var(--primary-color);
}

/* Responsive adjustments */
@media (max-width: 992px) {
  .collab-section h2 {
    font-size: 2rem;
  }
  
  .collab-grid, .labs-grid {
    grid-template-columns: repeat(auto-fill, minmax(280px, 1fr));
    gap: 1.5rem;
  }
}

@media (max-width: 768px) {
  .quarto-title-block .title {
    font-size: 2.5rem;
  }
  
  .collab-banner p {
    font-size: 1.1rem;
  }
  
  .collab-section h2 {
    font-size: 1.8rem;
  }
  
  .collab-section p.description {
    font-size: 1rem;
  }
  
  .collab-card-content, .lab-card {
    padding: 1.5rem;
  }
  
  .consortium-group h3 {
    font-size: 1.4rem;
  }
}

@media (max-width: 576px) {
  .collab-grid, .labs-grid {
    grid-template-columns: 1fr;
  }
  
  .consortium-container {
    flex-direction: column;
    gap: 2rem;
  }
  
  .collab-cta h2 {
    font-size: 1.6rem;
  }
  
  .collab-cta p {
    font-size: 1rem;
  }
}
</style>

::: {.collab-banner}
Our research is strengthened through international partnerships with leading scientists, laboratories, and organizations working to advance cancer research and improve patient outcomes.
:::

::: {.collab-section}
## Research Collaborators

::: {.description}
Key collaborators who partner with our lab to push the boundaries of computational oncology and cancer genomics research.
:::

::: {.collab-grid}
::: {.collab-card}
::: {.collab-card-content}
### Elizabeth Ryan
#### University of Limerick, Ireland
Co-supervisor of Ahmad Alkan
:::
:::

::: {.collab-card}
::: {.collab-card-content}
### Laurent Gatto
#### Université de Louvain, Belgium
Co-supervisor of Michael Lynch
:::
:::

::: {.collab-card}
::: {.collab-card-content}
### Paul Murray
#### University of Limerick, Ireland
:::
:::

::: {.collab-card}
::: {.collab-card-content}
### Gianpierro Cavalleri
#### RCSI, Dublin, Ireland
:::
:::

::: {.collab-card}
::: {.collab-card-content}
### Vince Carey
#### Brigham & Women's Hospital
Bioconductor
:::
:::

::: {.collab-card}
::: {.collab-card-content}
### Sherrie DiVito
#### Brigham & Women's Hospital
:::
:::
:::
:::

::: {.collab-section}
## Partner Laboratories

::: {.description}
Leading cancer research laboratories we work with to advance therapeutic discoveries and treatment approaches.
:::

::: {.labs-grid}
::: {.lab-card}
### Mitsiades Lab
#### Dana-Farber Cancer Institute
:::

::: {.lab-card}
### Marasco Lab
#### Dana-Farber Cancer Institute
:::

::: {.lab-card}
### Van Allen Lab
#### Dana-Farber Cancer Institute
:::
:::
:::

::: {.collab-section}
## Consortiums & Organizations

::: {.description}
Collaborative networks and organizations that facilitate data sharing, standardization, and research acceleration in cancer genomics.
:::

::: {.consortium-container}
::: {.consortium-group}
### National

::: {.consortium-list}
::: {.consortium-pill}
AICRI
:::

::: {.consortium-pill}
NaSPro
:::

::: {.consortium-pill}
SBI
:::
:::
:::

::: {.consortium-group}
### International

::: {.consortium-list}
::: {.consortium-pill}
Bioconductor
:::

::: {.consortium-pill}
GDI
:::

::: {.consortium-pill}
ELIXIR
:::

::: {.consortium-pill}
Human Cell Atlas
:::

::: {.consortium-pill}
OHDSI
:::

::: {.consortium-pill}
EHDEN
:::

::: {.consortium-pill}
Northeastern University
:::

::: {.consortium-pill}
UNCAN.eu
:::
:::
:::
:::
:::

::: {.collab-cta}
## Interested in Collaborating?

We're always open to new partnerships and collaborative opportunities that align with our research goals in computational oncology and cancer genomics.

[Contact Aedin Culhane](mailto:Aedin.Culhane@ul.ie){.cta-button}
:::