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norma installation java error #57

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teatree1212 opened this issue Apr 8, 2016 · 2 comments
Open

norma installation java error #57

teatree1212 opened this issue Apr 8, 2016 · 2 comments

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@teatree1212
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I get the following error message, when installing norma:
mvn clean install

[INFO] Scanning for projects...
[WARNING]
[WARNING] Some problems were encountered while building the effective model for org.xml-cml:norma:jar:0.1-SNAPSHOT
[WARNING] 'build.plugins.plugin.version' for com.mycila.maven-license-plugin:maven-license-plugin is missing. @ line 92, column 12
[WARNING] 'build.plugins.plugin.version' for org.codehaus.mojo:cobertura-maven-plugin is missing. @ line 53, column 12
[WARNING]
[WARNING] It is highly recommended to fix these problems because they threaten the stability of your build.
[WARNING]
[WARNING] For this reason, future Maven versions might no longer support building such malformed projects.
[WARNING]
[INFO]
[INFO] ------------------------------------------------------------------------
[INFO] Building norma 0.1-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO]
[INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ norma ---
[INFO] Deleting /Users/hildegaa/Documents/sra_upload/map_papers/norma/target
[INFO]
[INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ norma ---
[WARNING] Using platform encoding (UTF-8 actually) to copy filtered resources, i.e. build is platform dependent!
[INFO] Copying 46 resources
[INFO]
[INFO] --- maven-compiler-plugin:3.1:compile (default-compile) @ norma ---
[INFO] Changes detected - recompiling the module!
[WARNING] File encoding has not been set, using platform encoding UTF-8, i.e. build is platform dependent!
[INFO] Compiling 85 source files to /Users/hildegaa/Documents/sra_upload/map_papers/norma/target/classes
[INFO] -------------------------------------------------------------
[ERROR] COMPILATION ERROR :
[INFO] -------------------------------------------------------------
[ERROR] /Users/hildegaa/Documents/sra_upload/map_papers/norma/src/main/java/org/xmlcml/norma/pubstyle/getpapers/GetPapers.java:[14,30] cannot find symbol
symbol: class CMDir
location: package org.xmlcml.cmine.files
[ERROR] /Users/hildegaa/Documents/sra_upload/map_papers/norma/src/main/java/org/xmlcml/norma/input/html/HtmlCleaner.java:[8,30] cannot find symbol
symbol: class CMDir
location: package org.xmlcml.cmine.files
[ERROR] /Users/hildegaa/Documents/sra_upload/map_papers/norma/src/main/java/org/xmlcml/norma/NormaArgProcessor.java:[22,30] cannot find symbol
symbol: class CMDir
location: package org.xmlcml.cmine.files
[ERROR] /Users/hildegaa/Documents/sra_upload/map_papers/norma/src/main/java/org/xmlcml/norma/NormaTransformer.java:[28,30] cannot find symbol
symbol: class CMDir
location: package org.xmlcml.cmine.files
[ERROR] /Users/hildegaa/Documents/sra_upload/map_papers/norma/src/main/java/org/xmlcml/norma/NormaArgProcessor.java:[269,42] cannot find symbol
symbol: class CMDir
location: class org.xmlcml.norma.NormaArgProcessor
[ERROR] /Users/hildegaa/Documents/sra_upload/map_papers/norma/src/main/java/org/xmlcml/norma/NormaArgProcessor.java:[315,17] cannot find symbol
symbol: class CMDir
location: class org.xmlcml.norma.NormaArgProcessor
[ERROR] /Users/hildegaa/Documents/sra_upload/map_papers/norma/src/main/java/org/xmlcml/norma/NormaArgProcessor.java:[347,17] cannot find symbol
symbol: class CMDir
location: class org.xmlcml.norma.NormaArgProcessor
[ERROR] /Users/hildegaa/Documents/sra_upload/map_papers/norma/src/main/java/org/xmlcml/norma/NormaArgProcessor.java:[354,57] cannot find symbol
symbol: class CMDir
location: class org.xmlcml.norma.NormaArgProcessor
[ERROR] /Users/hildegaa/Documents/sra_upload/map_papers/norma/src/main/java/org/xmlcml/norma/NormaArgProcessor.java:[375,17] cannot find symbol
symbol: class CMDir
location: class org.xmlcml.norma.NormaArgProcessor
[ERROR] /Users/hildegaa/Documents/sra_upload/map_papers/norma/src/main/java/org/xmlcml/norma/NormaArgProcessor.java:[445,16] cannot find symbol
symbol: class CMDir
location: class org.xmlcml.norma.NormaArgProcessor
[ERROR] /Users/hildegaa/Documents/sra_upload/map_papers/norma/src/main/java/org/xmlcml/norma/util/TransformerWrapper.java:[25,30] cannot find symbol
symbol: class CMDir
location: package org.xmlcml.cmine.files
[ERROR] /Users/hildegaa/Documents/sra_upload/map_papers/norma/src/main/java/org/xmlcml/norma/NormaTransformer.java:[82,17] cannot find symbol
symbol: class CMDir
location: class org.xmlcml.norma.NormaTransformer
[ERROR] /Users/hildegaa/Documents/sra_upload/map_papers/norma/src/main/java/org/xmlcml/norma/util/TransformerWrapper.java:[171,38] cannot find symbol
symbol: class CMDir
location: class org.xmlcml.norma.util.TransformerWrapper
[ERROR] /Users/hildegaa/Documents/sra_upload/map_papers/norma/src/main/java/org/xmlcml/norma/input/pdf/PDF2XHTMLConverter.java:[14,30] cannot find symbol
symbol: class CMDir
location: package org.xmlcml.cmine.files
[ERROR] /Users/hildegaa/Documents/sra_upload/map_papers/norma/src/main/java/org/xmlcml/norma/input/pdf/PDF2XHTMLConverter.java:[36,17] cannot find symbol
symbol: class CMDir
location: class org.xmlcml.norma.input.pdf.PDF2XHTMLConverter
[ERROR] /Users/hildegaa/Documents/sra_upload/map_papers/norma/src/main/java/org/xmlcml/norma/input/pdf/PDF2XHTMLConverter.java:[42,35] cannot find symbol
symbol: class CMDir
location: class org.xmlcml.norma.input.pdf.PDF2XHTMLConverter
[INFO] 16 errors
[INFO] -------------------------------------------------------------
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 1.497 s
[INFO] Finished at: 2016-04-08T11:46:06+01:00
[INFO] Final Memory: 23M/316M
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-compiler-plugin:3.1:compile (default-compile) on project norma: Compilation failure: Compilation failure:
[ERROR] /Users/hildegaa/Documents/sra_upload/map_papers/norma/src/main/java/org/xmlcml/norma/pubstyle/getpapers/GetPapers.java:[14,30] cannot find symbol
[ERROR] symbol: class CMDir
[ERROR] location: package org.xmlcml.cmine.files
[ERROR] /Users/hildegaa/Documents/sra_upload/map_papers/norma/src/main/java/org/xmlcml/norma/input/html/HtmlCleaner.java:[8,30] cannot find symbol
[ERROR] symbol: class CMDir
[ERROR] location: package org.xmlcml.cmine.files
[ERROR] /Users/hildegaa/Documents/sra_upload/map_papers/norma/src/main/java/org/xmlcml/norma/NormaArgProcessor.java:[22,30] cannot find symbol
[ERROR] symbol: class CMDir
[ERROR] location: package org.xmlcml.cmine.files
[ERROR] /Users/hildegaa/Documents/sra_upload/map_papers/norma/src/main/java/org/xmlcml/norma/NormaTransformer.java:[28,30] cannot find symbol
[ERROR] symbol: class CMDir
[ERROR] location: package org.xmlcml.cmine.files
[ERROR] /Users/hildegaa/Documents/sra_upload/map_papers/norma/src/main/java/org/xmlcml/norma/NormaArgProcessor.java:[269,42] cannot find symbol
[ERROR] symbol: class CMDir
[ERROR] location: class org.xmlcml.norma.NormaArgProcessor
[ERROR] /Users/hildegaa/Documents/sra_upload/map_papers/norma/src/main/java/org/xmlcml/norma/NormaArgProcessor.java:[315,17] cannot find symbol
[ERROR] symbol: class CMDir
[ERROR] location: class org.xmlcml.norma.NormaArgProcessor
[ERROR] /Users/hildegaa/Documents/sra_upload/map_papers/norma/src/main/java/org/xmlcml/norma/NormaArgProcessor.java:[347,17] cannot find symbol
[ERROR] symbol: class CMDir
[ERROR] location: class org.xmlcml.norma.NormaArgProcessor
[ERROR] /Users/hildegaa/Documents/sra_upload/map_papers/norma/src/main/java/org/xmlcml/norma/NormaArgProcessor.java:[354,57] cannot find symbol
[ERROR] symbol: class CMDir
[ERROR] location: class org.xmlcml.norma.NormaArgProcessor
[ERROR] /Users/hildegaa/Documents/sra_upload/map_papers/norma/src/main/java/org/xmlcml/norma/NormaArgProcessor.java:[375,17] cannot find symbol
[ERROR] symbol: class CMDir
[ERROR] location: class org.xmlcml.norma.NormaArgProcessor
[ERROR] /Users/hildegaa/Documents/sra_upload/map_papers/norma/src/main/java/org/xmlcml/norma/NormaArgProcessor.java:[445,16] cannot find symbol
[ERROR] symbol: class CMDir
[ERROR] location: class org.xmlcml.norma.NormaArgProcessor
[ERROR] /Users/hildegaa/Documents/sra_upload/map_papers/norma/src/main/java/org/xmlcml/norma/util/TransformerWrapper.java:[25,30] cannot find symbol
[ERROR] symbol: class CMDir
[ERROR] location: package org.xmlcml.cmine.files
[ERROR] /Users/hildegaa/Documents/sra_upload/map_papers/norma/src/main/java/org/xmlcml/norma/NormaTransformer.java:[82,17] cannot find symbol
[ERROR] symbol: class CMDir
[ERROR] location: class org.xmlcml.norma.NormaTransformer
[ERROR] /Users/hildegaa/Documents/sra_upload/map_papers/norma/src/main/java/org/xmlcml/norma/util/TransformerWrapper.java:[171,38] cannot find symbol
[ERROR] symbol: class CMDir
[ERROR] location: class org.xmlcml.norma.util.TransformerWrapper
[ERROR] /Users/hildegaa/Documents/sra_upload/map_papers/norma/src/main/java/org/xmlcml/norma/input/pdf/PDF2XHTMLConverter.java:[14,30] cannot find symbol
[ERROR] symbol: class CMDir
[ERROR] location: package org.xmlcml.cmine.files
[ERROR] /Users/hildegaa/Documents/sra_upload/map_papers/norma/src/main/java/org/xmlcml/norma/input/pdf/PDF2XHTMLConverter.java:[36,17] cannot find symbol
[ERROR] symbol: class CMDir
[ERROR] location: class org.xmlcml.norma.input.pdf.PDF2XHTMLConverter
[ERROR] /Users/hildegaa/Documents/sra_upload/map_papers/norma/src/main/java/org/xmlcml/norma/input/pdf/PDF2XHTMLConverter.java:[42,35] cannot find symbol
[ERROR] symbol: class CMDir
[ERROR] location: class org.xmlcml.norma.input.pdf.PDF2XHTMLConverter
[ERROR] -> [Help 1]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
@petermr
Copy link
Member

petermr commented Apr 8, 2016

This is due to out of date jar files. make sure you have the latest
versions and then rebuild. If you have problems contact Tom Arrow who is
putting together updated instructions

On Fri, Apr 8, 2016 at 11:58 AM, teatree1212 [email protected]
wrote:

I get the following error message, when installing norma:
mvn clean install

[INFO] Scanning for projects...
[WARNING]
[WARNING] Some problems were encountered while building the effective
model for org.xml-cml:norma:jar:0.1-SNAPSHOT
[WARNING] 'build.plugins.plugin.version' for
com.mycila.maven-license-plugin:maven-license-plugin is missing. @ line 92,
column 12
[WARNING] 'build.plugins.plugin.version' for
org.codehaus.mojo:cobertura-maven-plugin is missing. @ line 53, column 12
[WARNING]
[WARNING] It is highly recommended to fix these problems because they
threaten the stability of your build.
[WARNING]
[WARNING] For this reason, future Maven versions might no longer support
building such malformed projects.
[WARNING]
[INFO]

[INFO]

[INFO] Building norma 0.1-SNAPSHOT

[INFO]

[INFO]
[INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ norma ---
[INFO] Deleting
/Users/hildegaa/Documents/sra_upload/map_papers/norma/target
[INFO]
[INFO] --- maven-resources-plugin:2.6:resources (default-resources) @
norma ---
[WARNING] Using platform encoding (UTF-8 actually) to copy filtered
resources, i.e. build is platform dependent!
[INFO] Copying 46 resources
[INFO]
[INFO] --- maven-compiler-plugin:3.1:compile (default-compile) @ norma ---
[INFO] Changes detected - recompiling the module!
[WARNING] File encoding has not been set, using platform encoding UTF-8,
i.e. build is platform dependent!
[INFO] Compiling 85 source files to
/Users/hildegaa/Documents/sra_upload/map_papers/norma/target/classes
[INFO] -------------------------------------------------------------
[ERROR] COMPILATION ERROR :
[INFO] -------------------------------------------------------------
[ERROR]
/Users/hildegaa/Documents/sra_upload/map_papers/norma/src/main/java/org/xmlcml/norma/pubstyle/getpapers/GetPapers.java:[14,30]
cannot find symbol
symbol: class CMDir
location: package org.xmlcml.cmine.files
[ERROR]
/Users/hildegaa/Documents/sra_upload/map_papers/norma/src/main/java/org/xmlcml/norma/input/html/HtmlCleaner.java:[8,30]
cannot find symbol
symbol: class CMDir
location: package org.xmlcml.cmine.files
[ERROR]
/Users/hildegaa/Documents/sra_upload/map_papers/norma/src/main/java/org/xmlcml/norma/NormaArgProcessor.java:[22,30]
cannot find symbol
symbol: class CMDir
location: package org.xmlcml.cmine.files
[ERROR]
/Users/hildegaa/Documents/sra_upload/map_papers/norma/src/main/java/org/xmlcml/norma/NormaTransformer.java:[28,30]
cannot find symbol
symbol: class CMDir
location: package org.xmlcml.cmine.files
[ERROR]
/Users/hildegaa/Documents/sra_upload/map_papers/norma/src/main/java/org/xmlcml/norma/NormaArgProcessor.java:[269,42]
cannot find symbol
symbol: class CMDir
location: class org.xmlcml.norma.NormaArgProcessor
[ERROR]
/Users/hildegaa/Documents/sra_upload/map_papers/norma/src/main/java/org/xmlcml/norma/NormaArgProcessor.java:[315,17]
cannot find symbol
symbol: class CMDir
location: class org.xmlcml.norma.NormaArgProcessor
[ERROR]
/Users/hildegaa/Documents/sra_upload/map_papers/norma/src/main/java/org/xmlcml/norma/NormaArgProcessor.java:[347,17]
cannot find symbol
symbol: class CMDir
location: class org.xmlcml.norma.NormaArgProcessor
[ERROR]
/Users/hildegaa/Documents/sra_upload/map_papers/norma/src/main/java/org/xmlcml/norma/NormaArgProcessor.java:[354,57]
cannot find symbol
symbol: class CMDir
location: class org.xmlcml.norma.NormaArgProcessor
[ERROR]
/Users/hildegaa/Documents/sra_upload/map_papers/norma/src/main/java/org/xmlcml/norma/NormaArgProcessor.java:[375,17]
cannot find symbol
symbol: class CMDir
location: class org.xmlcml.norma.NormaArgProcessor
[ERROR]
/Users/hildegaa/Documents/sra_upload/map_papers/norma/src/main/java/org/xmlcml/norma/NormaArgProcessor.java:[445,16]
cannot find symbol
symbol: class CMDir
location: class org.xmlcml.norma.NormaArgProcessor
[ERROR]
/Users/hildegaa/Documents/sra_upload/map_papers/norma/src/main/java/org/xmlcml/norma/util/TransformerWrapper.java:[25,30]
cannot find symbol
symbol: class CMDir
location: package org.xmlcml.cmine.files
[ERROR]
/Users/hildegaa/Documents/sra_upload/map_papers/norma/src/main/java/org/xmlcml/norma/NormaTransformer.java:[82,17]
cannot find symbol
symbol: class CMDir
location: class org.xmlcml.norma.NormaTransformer
[ERROR]
/Users/hildegaa/Documents/sra_upload/map_papers/norma/src/main/java/org/xmlcml/norma/util/TransformerWrapper.java:[171,38]
cannot find symbol
symbol: class CMDir
location: class org.xmlcml.norma.util.TransformerWrapper
[ERROR]
/Users/hildegaa/Documents/sra_upload/map_papers/norma/src/main/java/org/xmlcml/norma/input/pdf/PDF2XHTMLConverter.java:[14,30]
cannot find symbol
symbol: class CMDir
location: package org.xmlcml.cmine.files
[ERROR]
/Users/hildegaa/Documents/sra_upload/map_papers/norma/src/main/java/org/xmlcml/norma/input/pdf/PDF2XHTMLConverter.java:[36,17]
cannot find symbol
symbol: class CMDir
location: class org.xmlcml.norma.input.pdf.PDF2XHTMLConverter
[ERROR]
/Users/hildegaa/Documents/sra_upload/map_papers/norma/src/main/java/org/xmlcml/norma/input/pdf/PDF2XHTMLConverter.java:[42,35]
cannot find symbol
symbol: class CMDir
location: class org.xmlcml.norma.input.pdf.PDF2XHTMLConverter
[INFO] 16 errors
[INFO] -------------------------------------------------------------

[INFO]

[INFO] BUILD FAILURE

[INFO]

[INFO] Total time: 1.497 s
[INFO] Finished at: 2016-04-08T11:46:06+01:00
[INFO] Final Memory: 23M/316M

[INFO]

[ERROR] Failed to execute goal
org.apache.maven.plugins:maven-compiler-plugin:3.1:compile
(default-compile) on project norma: Compilation failure: Compilation
failure:
[ERROR]
/Users/hildegaa/Documents/sra_upload/map_papers/norma/src/main/java/org/xmlcml/norma/pubstyle/getpapers/GetPapers.java:[14,30]
cannot find symbol
[ERROR] symbol: class CMDir
[ERROR] location: package org.xmlcml.cmine.files
[ERROR]
/Users/hildegaa/Documents/sra_upload/map_papers/norma/src/main/java/org/xmlcml/norma/input/html/HtmlCleaner.java:[8,30]
cannot find symbol
[ERROR] symbol: class CMDir
[ERROR] location: package org.xmlcml.cmine.files
[ERROR]
/Users/hildegaa/Documents/sra_upload/map_papers/norma/src/main/java/org/xmlcml/norma/NormaArgProcessor.java:[22,30]
cannot find symbol
[ERROR] symbol: class CMDir
[ERROR] location: package org.xmlcml.cmine.files
[ERROR]
/Users/hildegaa/Documents/sra_upload/map_papers/norma/src/main/java/org/xmlcml/norma/NormaTransformer.java:[28,30]
cannot find symbol
[ERROR] symbol: class CMDir
[ERROR] location: package org.xmlcml.cmine.files
[ERROR]
/Users/hildegaa/Documents/sra_upload/map_papers/norma/src/main/java/org/xmlcml/norma/NormaArgProcessor.java:[269,42]
cannot find symbol
[ERROR] symbol: class CMDir
[ERROR] location: class org.xmlcml.norma.NormaArgProcessor
[ERROR]
/Users/hildegaa/Documents/sra_upload/map_papers/norma/src/main/java/org/xmlcml/norma/NormaArgProcessor.java:[315,17]
cannot find symbol
[ERROR] symbol: class CMDir
[ERROR] location: class org.xmlcml.norma.NormaArgProcessor
[ERROR]
/Users/hildegaa/Documents/sra_upload/map_papers/norma/src/main/java/org/xmlcml/norma/NormaArgProcessor.java:[347,17]
cannot find symbol
[ERROR] symbol: class CMDir
[ERROR] location: class org.xmlcml.norma.NormaArgProcessor
[ERROR]
/Users/hildegaa/Documents/sra_upload/map_papers/norma/src/main/java/org/xmlcml/norma/NormaArgProcessor.java:[354,57]
cannot find symbol
[ERROR] symbol: class CMDir
[ERROR] location: class org.xmlcml.norma.NormaArgProcessor
[ERROR]
/Users/hildegaa/Documents/sra_upload/map_papers/norma/src/main/java/org/xmlcml/norma/NormaArgProcessor.java:[375,17]
cannot find symbol
[ERROR] symbol: class CMDir
[ERROR] location: class org.xmlcml.norma.NormaArgProcessor
[ERROR]
/Users/hildegaa/Documents/sra_upload/map_papers/norma/src/main/java/org/xmlcml/norma/NormaArgProcessor.java:[445,16]
cannot find symbol
[ERROR] symbol: class CMDir
[ERROR] location: class org.xmlcml.norma.NormaArgProcessor
[ERROR]
/Users/hildegaa/Documents/sra_upload/map_papers/norma/src/main/java/org/xmlcml/norma/util/TransformerWrapper.java:[25,30]
cannot find symbol
[ERROR] symbol: class CMDir
[ERROR] location: package org.xmlcml.cmine.files
[ERROR]
/Users/hildegaa/Documents/sra_upload/map_papers/norma/src/main/java/org/xmlcml/norma/NormaTransformer.java:[82,17]
cannot find symbol
[ERROR] symbol: class CMDir
[ERROR] location: class org.xmlcml.norma.NormaTransformer
[ERROR]
/Users/hildegaa/Documents/sra_upload/map_papers/norma/src/main/java/org/xmlcml/norma/util/TransformerWrapper.java:[171,38]
cannot find symbol
[ERROR] symbol: class CMDir
[ERROR] location: class org.xmlcml.norma.util.TransformerWrapper
[ERROR]
/Users/hildegaa/Documents/sra_upload/map_papers/norma/src/main/java/org/xmlcml/norma/input/pdf/PDF2XHTMLConverter.java:[14,30]
cannot find symbol
[ERROR] symbol: class CMDir
[ERROR] location: package org.xmlcml.cmine.files
[ERROR]
/Users/hildegaa/Documents/sra_upload/map_papers/norma/src/main/java/org/xmlcml/norma/input/pdf/PDF2XHTMLConverter.java:[36,17]
cannot find symbol
[ERROR] symbol: class CMDir
[ERROR] location: class org.xmlcml.norma.input.pdf.PDF2XHTMLConverter
[ERROR]
/Users/hildegaa/Documents/sra_upload/map_papers/norma/src/main/java/org/xmlcml/norma/input/pdf/PDF2XHTMLConverter.java:[42,35]
cannot find symbol
[ERROR] symbol: class CMDir
[ERROR] location: class org.xmlcml.norma.input.pdf.PDF2XHTMLConverter
[ERROR] -> [Help 1]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the
-e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions,
please read the following articles:
[ERROR] [Help 1]
http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException

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#57

Peter Murray-Rust
Reader in Molecular Informatics
Unilever Centre, Dep. Of Chemistry
University of Cambridge
CB2 1EW, UK
+44-1223-763069

@tarrow
Copy link
Contributor

tarrow commented Apr 11, 2016

You probably don't need to build anything. Have you taken a look at our
installation instructions at http://contentmine.github.io ? That shows how
to download and install already built binaries.

On Fri, Apr 8, 2016 at 9:09 PM, petermr [email protected] wrote:

This is due to out of date jar files. make sure you have the latest
versions and then rebuild. If you have problems contact Tom Arrow who is
putting together updated instructions

On Fri, Apr 8, 2016 at 11:58 AM, teatree1212 [email protected]
wrote:

I get the following error message, when installing norma:
mvn clean install

[INFO] Scanning for projects...
[WARNING]
[WARNING] Some problems were encountered while building the effective
model for org.xml-cml:norma:jar:0.1-SNAPSHOT
[WARNING] 'build.plugins.plugin.version' for
com.mycila.maven-license-plugin:maven-license-plugin is missing. @ line
92,
column 12
[WARNING] 'build.plugins.plugin.version' for
org.codehaus.mojo:cobertura-maven-plugin is missing. @ line 53, column 12
[WARNING]
[WARNING] It is highly recommended to fix these problems because they
threaten the stability of your build.
[WARNING]
[WARNING] For this reason, future Maven versions might no longer support
building such malformed projects.
[WARNING]
[INFO]

[INFO]

[INFO] Building norma 0.1-SNAPSHOT

[INFO]

[INFO]
[INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ norma ---
[INFO] Deleting
/Users/hildegaa/Documents/sra_upload/map_papers/norma/target
[INFO]
[INFO] --- maven-resources-plugin:2.6:resources (default-resources) @
norma ---
[WARNING] Using platform encoding (UTF-8 actually) to copy filtered
resources, i.e. build is platform dependent!
[INFO] Copying 46 resources
[INFO]

[INFO] --- maven-compiler-plugin:3.1:compile (default-compile) @ norma

[INFO] Changes detected - recompiling the module!
[WARNING] File encoding has not been set, using platform encoding UTF-8,
i.e. build is platform dependent!
[INFO] Compiling 85 source files to
/Users/hildegaa/Documents/sra_upload/map_papers/norma/target/classes
[INFO] -------------------------------------------------------------
[ERROR] COMPILATION ERROR :
[INFO] -------------------------------------------------------------
[ERROR]

/Users/hildegaa/Documents/sra_upload/map_papers/norma/src/main/java/org/xmlcml/norma/pubstyle/getpapers/GetPapers.java:[14,30]
cannot find symbol
symbol: class CMDir
location: package org.xmlcml.cmine.files
[ERROR]

/Users/hildegaa/Documents/sra_upload/map_papers/norma/src/main/java/org/xmlcml/norma/input/html/HtmlCleaner.java:[8,30]
cannot find symbol
symbol: class CMDir
location: package org.xmlcml.cmine.files
[ERROR]

/Users/hildegaa/Documents/sra_upload/map_papers/norma/src/main/java/org/xmlcml/norma/NormaArgProcessor.java:[22,30]
cannot find symbol
symbol: class CMDir
location: package org.xmlcml.cmine.files
[ERROR]

/Users/hildegaa/Documents/sra_upload/map_papers/norma/src/main/java/org/xmlcml/norma/NormaTransformer.java:[28,30]
cannot find symbol
symbol: class CMDir
location: package org.xmlcml.cmine.files
[ERROR]

/Users/hildegaa/Documents/sra_upload/map_papers/norma/src/main/java/org/xmlcml/norma/NormaArgProcessor.java:[269,42]
cannot find symbol
symbol: class CMDir
location: class org.xmlcml.norma.NormaArgProcessor
[ERROR]

/Users/hildegaa/Documents/sra_upload/map_papers/norma/src/main/java/org/xmlcml/norma/NormaArgProcessor.java:[315,17]
cannot find symbol
symbol: class CMDir
location: class org.xmlcml.norma.NormaArgProcessor
[ERROR]

/Users/hildegaa/Documents/sra_upload/map_papers/norma/src/main/java/org/xmlcml/norma/NormaArgProcessor.java:[347,17]
cannot find symbol
symbol: class CMDir
location: class org.xmlcml.norma.NormaArgProcessor
[ERROR]

/Users/hildegaa/Documents/sra_upload/map_papers/norma/src/main/java/org/xmlcml/norma/NormaArgProcessor.java:[354,57]
cannot find symbol
symbol: class CMDir
location: class org.xmlcml.norma.NormaArgProcessor
[ERROR]

/Users/hildegaa/Documents/sra_upload/map_papers/norma/src/main/java/org/xmlcml/norma/NormaArgProcessor.java:[375,17]
cannot find symbol
symbol: class CMDir
location: class org.xmlcml.norma.NormaArgProcessor
[ERROR]

/Users/hildegaa/Documents/sra_upload/map_papers/norma/src/main/java/org/xmlcml/norma/NormaArgProcessor.java:[445,16]
cannot find symbol
symbol: class CMDir
location: class org.xmlcml.norma.NormaArgProcessor
[ERROR]

/Users/hildegaa/Documents/sra_upload/map_papers/norma/src/main/java/org/xmlcml/norma/util/TransformerWrapper.java:[25,30]
cannot find symbol
symbol: class CMDir
location: package org.xmlcml.cmine.files
[ERROR]

/Users/hildegaa/Documents/sra_upload/map_papers/norma/src/main/java/org/xmlcml/norma/NormaTransformer.java:[82,17]
cannot find symbol
symbol: class CMDir
location: class org.xmlcml.norma.NormaTransformer
[ERROR]

/Users/hildegaa/Documents/sra_upload/map_papers/norma/src/main/java/org/xmlcml/norma/util/TransformerWrapper.java:[171,38]
cannot find symbol
symbol: class CMDir
location: class org.xmlcml.norma.util.TransformerWrapper
[ERROR]

/Users/hildegaa/Documents/sra_upload/map_papers/norma/src/main/java/org/xmlcml/norma/input/pdf/PDF2XHTMLConverter.java:[14,30]
cannot find symbol
symbol: class CMDir
location: package org.xmlcml.cmine.files
[ERROR]

/Users/hildegaa/Documents/sra_upload/map_papers/norma/src/main/java/org/xmlcml/norma/input/pdf/PDF2XHTMLConverter.java:[36,17]
cannot find symbol
symbol: class CMDir
location: class org.xmlcml.norma.input.pdf.PDF2XHTMLConverter
[ERROR]

/Users/hildegaa/Documents/sra_upload/map_papers/norma/src/main/java/org/xmlcml/norma/input/pdf/PDF2XHTMLConverter.java:[42,35]
cannot find symbol
symbol: class CMDir
location: class org.xmlcml.norma.input.pdf.PDF2XHTMLConverter
[INFO] 16 errors
[INFO] -------------------------------------------------------------

[INFO]

[INFO] BUILD FAILURE

[INFO]

[INFO] Total time: 1.497 s
[INFO] Finished at: 2016-04-08T11:46:06+01:00
[INFO] Final Memory: 23M/316M

[INFO]

[ERROR] Failed to execute goal
org.apache.maven.plugins:maven-compiler-plugin:3.1:compile
(default-compile) on project norma: Compilation failure: Compilation
failure:
[ERROR]

/Users/hildegaa/Documents/sra_upload/map_papers/norma/src/main/java/org/xmlcml/norma/pubstyle/getpapers/GetPapers.java:[14,30]
cannot find symbol
[ERROR] symbol: class CMDir
[ERROR] location: package org.xmlcml.cmine.files
[ERROR]

/Users/hildegaa/Documents/sra_upload/map_papers/norma/src/main/java/org/xmlcml/norma/input/html/HtmlCleaner.java:[8,30]
cannot find symbol
[ERROR] symbol: class CMDir
[ERROR] location: package org.xmlcml.cmine.files
[ERROR]

/Users/hildegaa/Documents/sra_upload/map_papers/norma/src/main/java/org/xmlcml/norma/NormaArgProcessor.java:[22,30]
cannot find symbol
[ERROR] symbol: class CMDir
[ERROR] location: package org.xmlcml.cmine.files
[ERROR]

/Users/hildegaa/Documents/sra_upload/map_papers/norma/src/main/java/org/xmlcml/norma/NormaTransformer.java:[28,30]
cannot find symbol
[ERROR] symbol: class CMDir
[ERROR] location: package org.xmlcml.cmine.files
[ERROR]

/Users/hildegaa/Documents/sra_upload/map_papers/norma/src/main/java/org/xmlcml/norma/NormaArgProcessor.java:[269,42]
cannot find symbol
[ERROR] symbol: class CMDir
[ERROR] location: class org.xmlcml.norma.NormaArgProcessor
[ERROR]

/Users/hildegaa/Documents/sra_upload/map_papers/norma/src/main/java/org/xmlcml/norma/NormaArgProcessor.java:[315,17]
cannot find symbol
[ERROR] symbol: class CMDir
[ERROR] location: class org.xmlcml.norma.NormaArgProcessor
[ERROR]

/Users/hildegaa/Documents/sra_upload/map_papers/norma/src/main/java/org/xmlcml/norma/NormaArgProcessor.java:[347,17]
cannot find symbol
[ERROR] symbol: class CMDir
[ERROR] location: class org.xmlcml.norma.NormaArgProcessor
[ERROR]

/Users/hildegaa/Documents/sra_upload/map_papers/norma/src/main/java/org/xmlcml/norma/NormaArgProcessor.java:[354,57]
cannot find symbol
[ERROR] symbol: class CMDir
[ERROR] location: class org.xmlcml.norma.NormaArgProcessor
[ERROR]

/Users/hildegaa/Documents/sra_upload/map_papers/norma/src/main/java/org/xmlcml/norma/NormaArgProcessor.java:[375,17]
cannot find symbol
[ERROR] symbol: class CMDir
[ERROR] location: class org.xmlcml.norma.NormaArgProcessor
[ERROR]

/Users/hildegaa/Documents/sra_upload/map_papers/norma/src/main/java/org/xmlcml/norma/NormaArgProcessor.java:[445,16]
cannot find symbol
[ERROR] symbol: class CMDir
[ERROR] location: class org.xmlcml.norma.NormaArgProcessor
[ERROR]

/Users/hildegaa/Documents/sra_upload/map_papers/norma/src/main/java/org/xmlcml/norma/util/TransformerWrapper.java:[25,30]
cannot find symbol
[ERROR] symbol: class CMDir
[ERROR] location: package org.xmlcml.cmine.files
[ERROR]

/Users/hildegaa/Documents/sra_upload/map_papers/norma/src/main/java/org/xmlcml/norma/NormaTransformer.java:[82,17]
cannot find symbol
[ERROR] symbol: class CMDir
[ERROR] location: class org.xmlcml.norma.NormaTransformer
[ERROR]

/Users/hildegaa/Documents/sra_upload/map_papers/norma/src/main/java/org/xmlcml/norma/util/TransformerWrapper.java:[171,38]
cannot find symbol
[ERROR] symbol: class CMDir
[ERROR] location: class org.xmlcml.norma.util.TransformerWrapper
[ERROR]

/Users/hildegaa/Documents/sra_upload/map_papers/norma/src/main/java/org/xmlcml/norma/input/pdf/PDF2XHTMLConverter.java:[14,30]
cannot find symbol
[ERROR] symbol: class CMDir
[ERROR] location: package org.xmlcml.cmine.files
[ERROR]

/Users/hildegaa/Documents/sra_upload/map_papers/norma/src/main/java/org/xmlcml/norma/input/pdf/PDF2XHTMLConverter.java:[36,17]
cannot find symbol
[ERROR] symbol: class CMDir
[ERROR] location: class org.xmlcml.norma.input.pdf.PDF2XHTMLConverter
[ERROR]

/Users/hildegaa/Documents/sra_upload/map_papers/norma/src/main/java/org/xmlcml/norma/input/pdf/PDF2XHTMLConverter.java:[42,35]
cannot find symbol
[ERROR] symbol: class CMDir
[ERROR] location: class org.xmlcml.norma.input.pdf.PDF2XHTMLConverter
[ERROR] -> [Help 1]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the
-e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions,
please read the following articles:
[ERROR] [Help 1]
http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException

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#57

Peter Murray-Rust
Reader in Molecular Informatics
Unilever Centre, Dep. Of Chemistry
University of Cambridge
CB2 1EW, UK
+44-1223-763069

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