Update dependencies to current as of 2017-11-16

Author: rogerdahl

.travis.yml

@@ -9,7 +9,8 @@ python:
 before_install:
   - sudo apt-get -q update
   - sudo apt-get -q install -y build-essential python-dev libssl-dev libxml2-dev
-    libxslt1-dev libffi-dev postgresql-server-dev-9.3 openssl
+    libxslt1-dev libffi-dev postgresql-server-dev-9.3 openssl libsmbclient-dev
+    librsync-dev
 install:
   - pip install --upgrade pip
   - pip install --upgrade setuptools

client_cli/src/setup.py

@@ -28,7 +28,7 @@
 def main():
   setuptools.setup(
     name='dataone.cli',
-    version='2.3.11',
+    version='2.4.0',
     description='Command-Line Interface (CLI) for DataONE',
     author='DataONE Project',
     author_email='[email protected]',
@@ -37,8 +37,8 @@ def main():
     packages=setuptools.find_packages(),
     include_package_data=True,
     install_requires=[
-      'dataone.common == 2.3.11',
-      'dataone.libclient == 2.3.11',
+      'dataone.common == 2.4.0',
+      'dataone.libclient == 2.4.0',
       #
       'requests == 2.18.4',
     ],

client_onedrive/src/setup.py

@@ -32,7 +32,7 @@
 def main():
   setuptools.setup(
     name='dataone.onedrive',
-    version='2.3.11',
+    version='2.4.0',
     description='Filesystem access to the DataONE Workspace',
     author='DataONE Project',
     author_email='[email protected]',
@@ -41,8 +41,8 @@ def main():
     packages=setuptools.find_packages(),
     include_package_data=True,
     install_requires=[
-      'dataone.common == 2.3.11',
-      'dataone.libclient == 2.3.11',
+      'dataone.common == 2.4.0',
+      'dataone.libclient == 2.4.0',
       #
       'fusepy == 2.0.4',
       'pyxb == 1.2.6',

dev_tools/src/d1_dev/pip-update-all.py

@@ -27,8 +27,8 @@
 
 from __future__ import absolute_import
 
-import datetime
 import os
+import subprocess
 import sys
 
 
@@ -38,19 +38,13 @@ def main():
   except EnvironmentError:
     sys.exit('Must be root')
 
-  os.system(
-    "pip freeze > pip_freeze_{}.txt"
-    .format(datetime.datetime.now().isoformat())
-  )
+  freeze_str = subprocess.check_output(['pip', 'freeze'])
 
-  os.system(
-    "pip freeze --local | "
-    "grep -v '^\-e' | "
-    "cut -d = -f 1 | "
-    "xargs -n1 pip install -U"
-  )
+  for line_str in freeze_str.splitlines():
+    pkg_str, ver_str = line_str.strip().split('==')
+    print subprocess.check_output(['pip', 'install', '--upgrade', pkg_str])
 
-  os.system("pip check")
+  print subprocess.check_output(['pip', 'check'])
 
 
 if __name__ == '__main__':

dev_tools/src/d1_dev/src-sync-dependencies.py

@@ -41,7 +41,7 @@
 
 import d1_dev.util
 
-import d1_common.iter.file as file_iterator
+import d1_common.iter.dir
 import d1_common.util
 
 
@@ -77,7 +77,7 @@ def main():
 
   d1_common.util.log_setup(args.debug)
 
-  for setup_path in file_iterator.dir_iter(
+  for setup_path in d1_common.iter.dir.dir_iter(
       path_list=[args.path],
       include_glob_list=['setup.py'],
       exclude_glob_list=args.exclude,

dev_tools/src/setup.py

@@ -29,7 +29,7 @@
 def main():
   setuptools.setup(
     name='dataone.dev',
-    version='2.3.11',
+    version='2.4.0',
     description='DataONE developer tools',
     author='DataONE Project',
     author_email='[email protected]',

gmn/src/d1_gmn/version.py

@@ -1 +1 @@
-__version__ = '2.3.11'
+__version__ = '2.4.0'

gmn/src/setup.py

@@ -31,7 +31,7 @@ def main():
   # noinspection PyUnresolvedReferences
   setuptools.setup(
     name='dataone.gmn',
-    version='2.3.11',
+    version='2.4.0',
     description='DataONE Generic Member Node (GMN)',
     author='DataONE Project',
     author_email='[email protected]',
@@ -43,9 +43,9 @@ def main():
       '': ['settings.py'],
     },
     install_requires=[
-      'dataone.cli == 2.3.11',
-      'dataone.common == 2.3.11',
-      'dataone.libclient == 2.3.11',
+      'dataone.cli == 2.4.0',
+      'dataone.common == 2.4.0',
+      'dataone.libclient == 2.4.0',
       #
       'django == 1.11.7',
       'iso8601 == 0.1.12',

lib_client/src/setup.py

@@ -28,7 +28,7 @@
 def main():
   setuptools.setup(
     name='dataone.libclient',
-    version='2.3.11',
+    version='2.4.0',
     description='A DataONE client library for Python',
     author='DataONE Project',
     author_email='[email protected]',
@@ -37,7 +37,7 @@ def main():
     packages=setuptools.find_packages(),
     include_package_data=True,
     install_requires=[
-      'dataone.common == 2.3.11',
+      'dataone.common == 2.4.0',
       #
       'cachecontrol == 0.12.3',
       'pyxb == 1.2.6',

lib_common/src/d1_common/const.py

@@ -37,7 +37,7 @@
 )
 
 # Version of the DataONE Python stack
-VERSION = '2.3.11'
+VERSION = '2.4.0'
 
 # Maximum number of entries per list objects request
 MAX_LISTOBJECTS = 1000

lib_common/src/setup.py

@@ -28,7 +28,7 @@
 def main():
   setuptools.setup(
     name='dataone.common',
-    version='2.3.11',
+    version='2.4.0',
     description=(
       'Contains functionality common to projects that interact with '
       'the DataONE infrastructure via Python'

test_utilities/src/setup.py

@@ -28,7 +28,7 @@
 def main():
   setuptools.setup(
     name='dataone.test_utilities',
-    version='2.3.11',
+    version='2.4.0',
     description='Utilities for testing DataONE infrastructure components',
     author='DataONE Project',
     author_email='[email protected]',
@@ -37,7 +37,7 @@ def main():
     packages=setuptools.find_packages(),
     include_package_data=True,
     install_requires=[
-      'dataone.libclient == 2.3.11',
+      'dataone.libclient == 2.4.0',
       #
       'contextlib2 == 0.5.5',
       'coverage == 4.4.2',
@@ -48,7 +48,7 @@ def main():
       'multi-mechanize == 1.2.0',
       'posix-ipc == 1.0.0',
       'pyasn1 == 0.3.7',
-      'pytest == 3.2.3',
+      'pytest == 3.2.5',
       'pytest-catchlog == 1.2.2',
       'pytest-cov == 2.5.1',
       'pytest-cov == 2.5.1',

tools/src/setup.py

@@ -29,7 +29,7 @@
 def main():
   setuptools.setup(
     name='dataone.tools',
-    version='2.3.11',
+    version='2.4.0',
     description='DataONE tools and examples',
     author='DataONE Project',
     author_email='[email protected]',
@@ -42,9 +42,9 @@ def main():
     },
     install_requires=[
       # These are not yet available when bootstrapping on Travis
-      'dataone.cli == 2.3.11',
-      'dataone.common == 2.3.11',
-      'dataone.libclient == 2.3.11',
+      'dataone.cli == 2.4.0',
+      'dataone.common == 2.4.0',
+      'dataone.libclient == 2.4.0',
     ],
     setup_requires=[
       'setuptools_git >= 1.1',