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Cell type-specific predictivity? #11

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cafletezbrant opened this issue Apr 17, 2024 · 0 comments
Open

Cell type-specific predictivity? #11

cafletezbrant opened this issue Apr 17, 2024 · 0 comments

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@cafletezbrant
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Thanks for releasing this method for multiome data analysis.

Is there any easy way to use ChromatinHD pred to get predictivity of a given locus with respect to a given gene, for a specific cell type? Right now, I could train individual cell type models, but that would not share information across cell types. I also see that chd.models.pred.interpret.GeneMultiWindow().score() leverages get_prediction_censored() and I could play with passing different cells to cell_ixs.

Please advise,
Kipper

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