Add initial config for user auth (#10)

Author: jacobfilik

.github/workflows/publish-containers.yml

@@ -0,0 +1,68 @@
+#
+name: Create and publish a Docker image
+
+on:
+  release:
+    types: [published]
+
+# Defines two custom environment variables for the workflow. These are used for the Container registry domain, and a name for the Docker image that this workflow builds.
+env:
+  REGISTRY: ghcr.io
+  IMAGE_NAME: ${{ github.repository }}
+
+# There is a single job in this workflow. It's configured to run on the latest available version of Ubuntu.
+jobs:
+  build-and-push-image:
+    strategy:
+      matrix:
+        target:
+          - web-conexs-api
+          - web-conexs-client
+    runs-on: ubuntu-latest
+    # Sets the permissions granted to the `GITHUB_TOKEN` for the actions in this job.
+    permissions:
+      contents: read
+      packages: write
+      attestations: write
+      id-token: write
+      # 
+    steps:
+      - name: Checkout repository
+        uses: actions/checkout@v4
+      # Uses the `docker/login-action` action to log in to the Container registry registry using the account and password that will publish the packages. Once published, the packages are scoped to the account defined here.
+      - name: Log in to the Container registry
+        uses: docker/login-action@65b78e6e13532edd9afa3aa52ac7964289d1a9c1
+        with:
+          registry: ${{ env.REGISTRY }}
+          username: ${{ github.actor }}
+          password: ${{ secrets.GITHUB_TOKEN }}
+      
+      - name: Generate Image Name
+        run: echo IMAGE_REPOSITORY=ghcr.io/$(echo "${{ github.repository }}-${{ matrix.target }}" | tr '[:upper:]' '[:lower:]' | tr '[_]' '[\-]') >> $GITHUB_ENV
+
+      # This step uses [docker/metadata-action](https://github.com/docker/metadata-action#about) to extract tags and labels that will be applied to the specified image. The `id` "meta" allows the output of this step to be referenced in a subsequent step. The `images` value provides the base name for the tags and labels.
+      - name: Extract metadata (tags, labels) for Docker
+        id: meta
+        uses: docker/metadata-action@9ec57ed1fcdbf14dcef7dfbe97b2010124a938b7
+        with:
+          images: ${{ env.IMAGE_REPOSITORY }}
+      # This step uses the `docker/build-push-action` action to build the image, based on your repository's `Dockerfile`. If the build succeeds, it pushes the image to GitHub Packages.
+      # It uses the `context` parameter to define the build's context as the set of files located in the specified path. For more information, see "[Usage](https://github.com/docker/build-push-action#usage)" in the README of the `docker/build-push-action` repository.
+      # It uses the `tags` and `labels` parameters to tag and label the image with the output from the "meta" step.
+      - name: Build and push Docker image
+        id: push
+        uses: docker/build-push-action@f2a1d5e99d037542a71f64918e516c093c6f3fc4
+        with:
+          context: ./${{ matrix.target }}/
+          push: true
+          tags: ${{ steps.meta.outputs.tags }}
+          labels: ${{ steps.meta.outputs.labels }}
+      
+      # This step generates an artifact attestation for the image, which is an unforgeable statement about where and how it was built. It increases supply chain security for people who consume the image. For more information, see "[AUTOTITLE](/actions/security-guides/using-artifact-attestations-to-establish-provenance-for-builds)." 
+      - name: Generate artifact attestation
+        uses: actions/attest-build-provenance@v1
+        with:
+          subject-name: ${{ env.IMAGE_REPOSITORY }}
+          subject-digest: ${{ steps.push.outputs.digest }}
+          push-to-registry: true
+      

web-conexs-api/Dockerfile

@@ -25,5 +25,5 @@ COPY --from=build /venv/ /venv/
 ENV PATH=/venv/bin:$PATH
 
 # change this entrypoint if it is not the same as the repo
-ENTRYPOINT ["web-conexs-api"]
+ENTRYPOINT ["python"]
 CMD ["--version"]

web-conexs-api/src/web_conexs_api/app.py

@@ -1,7 +1,7 @@
 from fastapi import FastAPI
 from fastapi_pagination import add_pagination
 
-from .routers import crystals, fdmnes, molecules, orca, simulations
+from .routers import crystals, fdmnes, molecules, orca, simulations, user
 
 app = FastAPI()
 
@@ -10,5 +10,6 @@
 app.include_router(molecules.router)
 app.include_router(crystals.router)
 app.include_router(simulations.router)
+app.include_router(user.router)
 
 add_pagination(app)

web-conexs-api/src/web_conexs_api/crud.py

@@ -328,3 +328,10 @@ def get_orca_xas(session, id, user_id):
     }
 
     return output
+
+
+def get_user(session, user_id):
+    statement = select(Person).where(Person.identifier == user_id)
+    person = session.exec(statement).first()
+
+    return person

web-conexs-api/src/web_conexs_api/routers/user.py

@@ -0,0 +1,15 @@
+from fastapi import APIRouter, Depends
+from sqlmodel import Session
+
+from ..auth import get_current_user
+from ..crud import get_user
+from ..database import get_session
+
+router = APIRouter()
+
+
+@router.get("/api/user")
+async def check(
+    session: Session = Depends(get_session), user_id: str = Depends(get_current_user)
+):
+    return get_user(session, user_id)

web-conexs-client/Dockerfile

@@ -0,0 +1,25 @@
+#build client
+#build api
+#copy to runtime
+
+FROM node:18-bullseye-slim as build-web
+
+WORKDIR /client
+
+RUN yes | npm install -g pnpm
+
+RUN apt update 
+
+COPY . .
+
+RUN yes | pnpm install
+
+RUN pnpm vite build
+
+From nginx as host
+
+COPY --from=build-web /client/dist/ /usr/share/nginx/html
+COPY ./nginx/default.conf /etc/nginx/conf.d/default.conf
+
+# change this entrypoint if it is not the same as the repo
+ENTRYPOINT ["nginx","-g", "daemon off;"]

web-conexs-client/nginx/default.conf

@@ -0,0 +1,24 @@
+server {
+    listen       80;
+    server_name  localhost;
+
+    #access_log  /var/log/nginx/host.access.log  main;
+
+
+    location / {
+        root   /usr/share/nginx/html;
+        index  index.html index.htm;
+        try_files $uri /index.html =404;
+    }
+
+    #error_page  404              /404.html;
+
+    # redirect server error pages to the static page /50x.html
+    #
+    error_page   500 502 503 504  /50x.html;
+    location = /50x.html {
+        root   /usr/share/nginx/html;
+    }
+
+
+}