Donders-Institute
diff --git a/‎README.md
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diff --git a/‎configs/default_config.yaml
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diff --git a/‎configs/tutorial_config.yaml
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diff --git a/‎examples/ROI_intersection.m
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diff --git a/‎examples/calibration_bob_ventral_striatum.m
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diff --git a/‎examples/calibration_sjoerd.m
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diff --git a/‎examples/example_batch_processing.m
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diff --git a/‎examples/example_itrusst.m
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diff --git a/‎examples/example_morteza.m
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diff --git a/‎examples/example_pipeline_judith.m
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diff --git a/‎examples/example_plot_group_data_in_MNI.m
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diff --git a/‎examples/pipeline_bob_transducer_positioning.m
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diff --git a/‎examples/pipeline_camila.m
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diff --git a/‎examples/pipeline_sjoerd.m
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diff --git a/‎examples/pipeline_sjoerd_080922.m
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diff --git a/‎examples/postprocessing_sjoerd.R
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diff --git a/‎examples/postprocessing_sjoerd.m
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diff --git a/‎functions/align_to_focus_axis_and_scale.m
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diff --git a/‎functions/analyze_transducer_position.m
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diff --git a/‎functions/analyze_transducer_position_fast.m
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diff --git a/‎functions/bounded_interp1.m
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diff --git a/‎functions/check_thermal_parameters.m
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diff --git a/‎functions/combine_plots_by_suffix.m
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diff --git a/‎functions/confirm_overwriting.m
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diff --git a/‎functions/confirmation_dlg.m
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diff --git a/‎functions/convert_final_to_MNI_matlab.m
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diff --git a/‎functions/convert_final_to_MNI_simnibs.m
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diff --git a/‎functions/create_group_MNI_plots.m
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diff --git a/‎functions/find_min_factor.m
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diff --git a/‎functions/fitPowerLawParamsMulti.m
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diff --git a/‎functions/getArc.m
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diff --git a/‎functions/get_alpha_coeff.m
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diff --git a/‎functions/get_crop_dims.m
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diff --git a/‎functions/get_slice_by_label.m
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diff --git a/‎functions/get_trans_pos_from_trigger_markers.m
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diff --git a/‎functions/get_transducer_box.m
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diff --git a/‎functions/get_xyz_mesh.m
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diff --git a/‎functions/load_parameters.m
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diff --git a/‎functions/masked_max_3d.m
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diff --git a/‎functions/median_montage.m
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diff --git a/‎functions/mergeStructure.m
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diff --git a/‎functions/mni2subject_coords_LDfix.m
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diff --git a/‎functions/phase_optimization_annulus.m
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diff --git a/‎functions/plot_coronal_slices.m
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diff --git a/‎functions/plot_heating_sims.m
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diff --git a/‎functions/plot_isppa_over_image.m
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diff --git a/‎functions/plot_isppa_over_image_2d.m
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diff --git a/‎functions/plot_t1_with_transducer.m
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diff --git a/‎functions/position_transducer_localite.m
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diff --git a/‎functions/preprocess_brain.m
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diff --git a/‎functions/prova.m
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diff --git a/‎functions/ras_to_grid.m
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diff --git a/‎functions/round_if_integer.m
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diff --git a/‎functions/run_heating_simulations.m
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diff --git a/‎functions/run_segmentation.m
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diff --git a/‎functions/run_simulations.m
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diff --git a/‎functions/setup_grid_source_sensor.m
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diff --git a/‎functions/setup_medium.m
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diff --git a/‎functions/setup_source.m
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diff --git a/‎functions/show_3d_head.m
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diff --git a/‎functions/show_positioning_plots.m
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diff --git a/‎functions/single_subject_pipeline_with_qsub.m
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diff --git a/‎functions/smooth_img.m
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diff --git a/‎functions/subset_fields.m
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diff --git a/‎functions/transducer_setup.m
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diff --git a/‎functions/upsample_to_grid.m
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diff --git a/‎functions/zip_fields.m
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diff --git a/‎single_subject_pipeline.m
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diff --git a/‎toolboxes/FEX-minimize b/‎toolboxes/FEX-minimize
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diff --git a/‎toolboxes/FEX-minimize/BUGS.m
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diff --git a/‎toolboxes/FEX-minimize/README.md
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