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LookupTable_Averages.R
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#library(ggplot2)
LookupTable=read.csv("C:/Users/UCD/Documents/SUSPOLL/Code/LookupTable_Bumblebee_Active.csv")
colnames(LookupTable)=c("resting","shivering","flying")
# MeraData_1 = load("C:/Users/UCD/Downloads/Temp_subset_hourly_2016_01.RData")
# MeraData_2 = load("C:/Users/UCD/Downloads/Temp_subset_hourly_2016_02.RData")
# MeraData_3 = load("C:/Users/UCD/Downloads/Temp_subset_hourly_2016_03.RData")
# MeraData_4 = load("C:/Users/UCD/Downloads/Temp_subset_hourly_2016_04.RData")
# MeraData_5 = load("C:/Users/UCD/Downloads/Temp_subset_hourly_2016_05.RData")
# MeraData_6 = load("C:/Users/UCD/Downloads/Temp_subset_hourly_2016_06.RData")
# MeraData_7 = load("C:/Users/UCD/Downloads/Temp_subset_hourly_2016_07.RData")
# MeraData_8 = load("C:/Users/UCD/Downloads/Temp_subset_hourly_2016_08.RData")
# MeraData_9 = load("C:/Users/UCD/Downloads/Temp_subset_hourly_2016_09.RData")
# MeraData_10 = load("C:/Users/UCD/Downloads/Temp_subset_hourly_2016_10.RData")
# MeraData_11 = load("C:/Users/UCD/Downloads/Temp_subset_hourly_2016_11.RData")
# MeraData_12 = load("C:/Users/UCD/Downloads/Temp_subset_hourly_2016_12.RData")
#MeraData = mera_hourly
#Day = 20160115
#Location = c(53.457,-6.140)
#mode = 3
CalculateAverages = function(MeraData,LookupTable,Location,mode){
#takes in Mera climate data, lookup table of temps, a day, and a location
#plots the equilibrium thorax temp as a function of time over the day
#Day should be in format yyyymmdd with no spaces
#Location should be in format c(latitude,longitude)
#mode is 1,2,3 for "resting","shivering","flying"
SubsetLat = MeraData[which(round(MeraData$Latitude,3)==Location[1]),]
SubsetLong = SubsetLat[which(round(SubsetLat$Longitude,3)==Location[2]),]
Index0 = which(SubsetLong$dataTime.==0)
Index300 = which(SubsetLong$dataTime.==300)
Index600 = which(SubsetLong$dataTime.==600)
Index900 = which(SubsetLong$dataTime.==900)
Index1200 = which(SubsetLong$dataTime.==1200)
Index1500 = which(SubsetLong$dataTime.==1500)
Index1800 = which(SubsetLong$dataTime.==1800)
Index2100 = which(SubsetLong$dataTime.==2100)
Subset0 = SubsetLong[Index0,]
Subset300 = SubsetLong[Index300,]
Subset600 = SubsetLong[Index600,]
Subset900 = SubsetLong[Index900,]
Subset1200 = SubsetLong[Index1200,]
Subset1500 = SubsetLong[Index1500,]
Subset1800 = SubsetLong[Index1800,]
Subset2100 = SubsetLong[Index2100,]
Avg_SD = matrix(NA, nrow=8,ncol=2)
Avg_SD[1,1] = mean(Subset0$Value.) #column for mean/sd
Avg_SD[2,1] = mean(Subset300$Value.) #column for
Avg_SD[3,1] = mean(Subset600$Value.) #column for
Avg_SD[4,1] = mean(Subset900$Value.) #column for
Avg_SD[5,1] = mean(Subset1200$Value.) #column for
Avg_SD[6,1] = mean(Subset1500$Value.) #column for
Avg_SD[7,1] = mean(Subset1800$Value.) #column for
Avg_SD[8,1] = mean(Subset2100$Value.) #column for
Avg_SD[1,2] = sd(Subset0$Value.) #column for
Avg_SD[2,2] = sd(Subset300$Value.) #column for
Avg_SD[3,2] = sd(Subset600$Value.) #column for
Avg_SD[4,2] = sd(Subset900$Value.) #column for
Avg_SD[5,2] = sd(Subset1200$Value.) #column for
Avg_SD[6,2] = sd(Subset1500$Value.) #column for
Avg_SD[7,2] = sd(Subset1800$Value.) #column for
Avg_SD[8,2] = sd(Subset2100$Value.) #column for
AirTemps = round(cbind(Avg_SD[,1]-Avg_SD[,2],Avg_SD[,1],Avg_SD[,1]+Avg_SD[,2])-273.15)
ThoraxTemps_MinAvgMax = matrix(NA, nrow=8,ncol=3)
for(i in 1:8){
ThoraxTemps_MinAvgMax[i,1] = LookupTable[AirTemps[i,1]+6,mode] #column for mode
ThoraxTemps_MinAvgMax[i,2] = LookupTable[AirTemps[i,2]+6,mode] #column for mode
ThoraxTemps_MinAvgMax[i,3] = LookupTable[AirTemps[i,3]+6,mode] #column for mode
#In lookup table, row n corresponds to air temp n-6
#so if AirTemps[i]=1, need to look in row 7 of lookup table, i.e. AirTemps[i]+6
}
return(cbind(ThoraxTemps_MinAvgMax,AirTemps))
}
Find_Heatwaves = function(MeraData,LookupTable,mode){
ULocations = unique(MeraData[,c('Latitude','Longitude')])
ULocations$Location = paste0('L',seq(nrow(ULocations)))
UDays = data.frame(dataDate.=unique(MeraData$dataDate.))
UDays$Day = paste0('D',seq(nrow(UDays)))
MeraData=merge(MeraData,ULocations)
MeraData=merge(MeraData,UDays)
Heatwave_Time_Indices = which((MeraData$Value.-273.15)>25)
temp = MeraData[Heatwave_Time_Indices,]
HeatwaveDays = subset(MeraData,
Location %in% temp$Location &
Day %in% temp$Day)
# Heatwave_LocationDays = MeraData$Day[Heatwave_Time_Indices,]
Index0 = which(HeatwaveDays$dataTime.==0)
Index300 = which(HeatwaveDays$dataTime.==300)
Index600 = which(HeatwaveDays$dataTime.==600)
Index900 = which(HeatwaveDays$dataTime.==900)
Index1200 = which(HeatwaveDays$dataTime.==1200)
Index1500 = which(HeatwaveDays$dataTime.==1500)
Index1800 = which(HeatwaveDays$dataTime.==1800)
Index2100 = which(HeatwaveDays$dataTime.==2100)
Subset0 = HeatwaveDays[Index0,]
Subset300 = HeatwaveDays[Index300,]
Subset600 = HeatwaveDays[Index600,]
Subset900 = HeatwaveDays[Index900,]
Subset1200 = HeatwaveDays[Index1200,]
Subset1500 = HeatwaveDays[Index1500,]
Subset1800 = HeatwaveDays[Index1800,]
Subset2100 = HeatwaveDays[Index2100,]
Avg_SD = matrix(NA, nrow=8,ncol=2)
Avg_SD[1,1] = mean(Subset0$Value.) #column for mean/sd
Avg_SD[2,1] = mean(Subset300$Value.) #column for
Avg_SD[3,1] = mean(Subset600$Value.) #column for
Avg_SD[4,1] = mean(Subset900$Value.) #column for
Avg_SD[5,1] = mean(Subset1200$Value.) #column for
Avg_SD[6,1] = mean(Subset1500$Value.) #column for
Avg_SD[7,1] = mean(Subset1800$Value.) #column for
Avg_SD[8,1] = mean(Subset2100$Value.) #column for
Avg_SD[1,2] = sd(Subset0$Value.) #column for
Avg_SD[2,2] = sd(Subset300$Value.) #column for
Avg_SD[3,2] = sd(Subset600$Value.) #column for
Avg_SD[4,2] = sd(Subset900$Value.) #column for
Avg_SD[5,2] = sd(Subset1200$Value.) #column for
Avg_SD[6,2] = sd(Subset1500$Value.) #column for
Avg_SD[7,2] = sd(Subset1800$Value.) #column for
Avg_SD[8,2] = sd(Subset2100$Value.) #column for
AirTemps = round(cbind(Avg_SD[,1]-Avg_SD[,2],Avg_SD[,1],Avg_SD[,1]+Avg_SD[,2])-273.15)
ThoraxTemps_MinAvgMax = matrix(NA, nrow=8,ncol=3)
for(i in 1:8){
ThoraxTemps_MinAvgMax[i,1] = LookupTable[AirTemps[i,1]+6,mode] #column for mode
ThoraxTemps_MinAvgMax[i,2] = LookupTable[AirTemps[i,2]+6,mode] #column for mode
ThoraxTemps_MinAvgMax[i,3] = LookupTable[AirTemps[i,3]+6,mode] #column for mode
#In lookup table, row n corresponds to air temp n-6
#so if AirTemps[i]=1, need to look in row 7 of lookup table, i.e. AirTemps[i]+6
}
return(cbind(ThoraxTemps_MinAvgMax,AirTemps))
}
load("C:/Users/UCD/Downloads/Temp_subset_hourly_2016_01.RData")
MeraData1 = mera_hourly
load("C:/Users/UCD/Downloads/Temp_subset_hourly_2016_02.RData")
MeraData2 = mera_hourly
load("C:/Users/UCD/Downloads/Temp_subset_hourly_2016_03.RData")
MeraData3 = mera_hourly
load("C:/Users/UCD/Downloads/Temp_subset_hourly_2016_04.RData")
MeraData4 = mera_hourly
load("C:/Users/UCD/Downloads/Temp_subset_hourly_2016_05.RData")
MeraData5 = mera_hourly
load("C:/Users/UCD/Downloads/Temp_subset_hourly_2016_06.RData")
MeraData6 = mera_hourly
load("C:/Users/UCD/Downloads/Temp_subset_hourly_2016_07.RData")
MeraData7 = mera_hourly
load("C:/Users/UCD/Downloads/Temp_subset_hourly_2016_08.RData")
MeraData8 = mera_hourly
load("C:/Users/UCD/Downloads/Temp_subset_hourly_2016_09.RData")
MeraData9 = mera_hourly
load("C:/Users/UCD/Downloads/Temp_subset_hourly_2016_10.RData")
MeraData10 = mera_hourly
load("C:/Users/UCD/Downloads/Temp_subset_hourly_2016_11.RData")
MeraData11 = mera_hourly
load("C:/Users/UCD/Downloads/Temp_subset_hourly_2016_12.RData")
MeraData12 = mera_hourly
# ThoraxTemps_MinAvgMax_1 = CalculateAverages(MeraData1,LookupTable,c(53.457,-6.140),3)
# ThoraxTemps_MinAvgMax_2 = CalculateAverages(MeraData2,LookupTable,c(53.457,-6.140),3)
# ThoraxTemps_MinAvgMax_3 = CalculateAverages(MeraData3,LookupTable,c(53.457,-6.140),3)
# ThoraxTemps_MinAvgMax_4 = CalculateAverages(MeraData4,LookupTable,c(53.457,-6.140),3)
ThoraxTemps_MinAvgMax_5 = CalculateAverages(MeraData5,LookupTable,c(53.457,-6.140),3)
# ThoraxTemps_MinAvgMax_6 = CalculateAverages(MeraData6,LookupTable,c(53.457,-6.140),3)
# ThoraxTemps_MinAvgMax_7 = CalculateAverages(MeraData7,LookupTable,c(53.457,-6.140),3)
# ThoraxTemps_MinAvgMax_8 = CalculateAverages(MeraData8,LookupTable,c(53.457,-6.140),3)
# ThoraxTemps_MinAvgMax_9 = CalculateAverages(MeraData9,LookupTable,c(53.457,-6.140),3)
# ThoraxTemps_MinAvgMax_10 = CalculateAverages(MeraData10,LookupTable,c(53.457,-6.140),3)
# ThoraxTemps_MinAvgMax_11 = CalculateAverages(MeraData11,LookupTable,c(53.457,-6.140),3)
# ThoraxTemps_MinAvgMax_12 = CalculateAverages(MeraData12,LookupTable,c(53.457,-6.140),3)
MeraDataGrand = rbind(MeraData1,MeraData2,MeraData3,MeraData4,MeraData5,MeraData6,
MeraData7,MeraData8,MeraData9,MeraData10,MeraData11,MeraData12)
Heatwave_Averages = Find_Heatwaves(MeraDataGrand,LookupTable,3)
# par(mfrow=c(3,4))
x=c(0,300,600,900,1200,1500,1800,2100)/100
epsilon = .5
y_range = c(0,44)
hours=3:8
# y=ThoraxTemps_MinAvgMax_1[,2]
# y_plus = ThoraxTemps_MinAvgMax_1[,3]
# y_minus = ThoraxTemps_MinAvgMax_1[,1]
# #points(x, y, ylim=c(38,43),col=rainbow(12)[1])
# plot(x, y, ylim=y_range,col=rainbow(12)[1],xlab='time',ylab='thorax temp', main='Jan')
# segments(x, y_minus,x, y_plus,col=rainbow(12)[1])
# segments(x-epsilon,y_plus,x+epsilon,y_plus,col=rainbow(12)[1])
# segments(x-epsilon,y_minus,x+epsilon,y_minus,col=rainbow(12)[1])
# points(x,ThoraxTemps_MinAvgMax_1[,5]) #add the air temperature
# y_plus_air = ThoraxTemps_MinAvgMax_1[,6]
# y_minus_air = ThoraxTemps_MinAvgMax_1[,4]
# segments(x, y_minus_air,x, y_plus_air)
# segments(x-epsilon,y_plus_air,x+epsilon,y_plus_air)
# segments(x-epsilon,y_minus_air,x+epsilon,y_minus_air)
#
# y=ThoraxTemps_MinAvgMax_2[,2]
# y_plus = ThoraxTemps_MinAvgMax_2[,3]
# y_minus = ThoraxTemps_MinAvgMax_2[,1]
# #points(x, y,col=rainbow(12)[2])
# plot(x, y, ylim=y_range,col=rainbow(12)[2],xlab='time',ylab='thorax temp', main='Feb')
# segments(x, y_minus,x, y_plus,col=rainbow(12)[2])
# segments(x-epsilon,y_plus,x+epsilon,y_plus,col=rainbow(12)[2])
# segments(x-epsilon,y_minus,x+epsilon,y_minus,col=rainbow(12)[2])
# points(x,ThoraxTemps_MinAvgMax_2[,5]) #add the air temperature
# y_plus_air = ThoraxTemps_MinAvgMax_2[,6]
# y_minus_air = ThoraxTemps_MinAvgMax_2[,4]
# segments(x, y_minus_air,x, y_plus_air)
# segments(x-epsilon,y_plus_air,x+epsilon,y_plus_air)
# segments(x-epsilon,y_minus_air,x+epsilon,y_minus_air)
#
# y=ThoraxTemps_MinAvgMax_3[,2]
# y_plus = ThoraxTemps_MinAvgMax_3[,3]
# y_minus = ThoraxTemps_MinAvgMax_3[,1]
# #points(x, y,col=rainbow(12)[3])
# plot(x, y, ylim=y_range,col=rainbow(12)[3],xlab='time',ylab='thorax temp', main='Mar')
# segments(x, y_minus,x, y_plus,col=rainbow(12)[3])
# segments(x-epsilon,y_plus,x+epsilon,y_plus,col=rainbow(12)[3])
# segments(x-epsilon,y_minus,x+epsilon,y_minus,col=rainbow(12)[3])
# points(x,ThoraxTemps_MinAvgMax_3[,5]) #add the air temperature
# y_plus_air = ThoraxTemps_MinAvgMax_3[,6]
# y_minus_air = ThoraxTemps_MinAvgMax_3[,4]
# segments(x, y_minus_air,x, y_plus_air)
# segments(x-epsilon,y_plus_air,x+epsilon,y_plus_air)
# segments(x-epsilon,y_minus_air,x+epsilon,y_minus_air)
#
# y=ThoraxTemps_MinAvgMax_4[,2]
# y_plus = ThoraxTemps_MinAvgMax_4[,3]
# y_minus = ThoraxTemps_MinAvgMax_4[,1]
# #points(x, y,col=rainbow(12)[4])
# plot(x, y, ylim=y_range,col=rainbow(12)[4],xlab='time',ylab='thorax temp', main='Apr')
# segments(x, y_minus,x, y_plus,col=rainbow(12)[4])
# segments(x-epsilon,y_plus,x+epsilon,y_plus,col=rainbow(12)[4])
# segments(x-epsilon,y_minus,x+epsilon,y_minus,col=rainbow(12)[4])
# points(x,ThoraxTemps_MinAvgMax_4[,5]) #add the air temperature
# y_plus_air = ThoraxTemps_MinAvgMax_4[,6]
# y_minus_air = ThoraxTemps_MinAvgMax_4[,4]
# segments(x, y_minus_air,x, y_plus_air)
# segments(x-epsilon,y_plus_air,x+epsilon,y_plus_air)
# segments(x-epsilon,y_minus_air,x+epsilon,y_minus_air)
y=ThoraxTemps_MinAvgMax_5[,2]
y_plus = ThoraxTemps_MinAvgMax_5[,3]
y_minus = ThoraxTemps_MinAvgMax_5[,1]
#points(x, y,col=rainbow(12)[5])
plot(x[hours], y[hours], ylim=y_range,col=rainbow(12)[5],xlab='time',ylab='temperature (C)', main='2016 May Average')
segments(x[hours], y_minus[hours],x[hours], y_plus[hours],col=rainbow(12)[5])
segments(x[hours]-epsilon,y_plus[hours],x[hours]+epsilon,y_plus[hours],col=rainbow(12)[5])
segments(x[hours]-epsilon,y_minus[hours],x[hours]+epsilon,y_minus[hours],col=rainbow(12)[5])
points(x[hours],ThoraxTemps_MinAvgMax_5[hours,5]) #add the air temperature
y_plus_air = ThoraxTemps_MinAvgMax_5[,6]
y_minus_air = ThoraxTemps_MinAvgMax_5[,4]
segments(x[hours], y_minus_air[hours],x[hours], y_plus_air[hours])
segments(x[hours]-epsilon,y_plus_air[hours],x[hours]+epsilon,y_plus_air[hours])
segments(x[hours]-epsilon,y_minus_air[hours],x[hours]+epsilon,y_minus_air[hours])
# y=ThoraxTemps_MinAvgMax_6[,2]
# y_plus = ThoraxTemps_MinAvgMax_6[,3]
# y_minus = ThoraxTemps_MinAvgMax_6[,1]
# #points(x, y,col=rainbow(12)[6])
# plot(x, y, ylim=y_range,col=rainbow(12)[6],xlab='time',ylab='thorax temp', main='Jun')
# segments(x, y_minus,x, y_plus,col=rainbow(12)[6])
# segments(x-epsilon,y_plus,x+epsilon,y_plus,col=rainbow(12)[6])
# segments(x-epsilon,y_minus,x+epsilon,y_minus,col=rainbow(12)[6])
# points(x,ThoraxTemps_MinAvgMax_6[,5]) #add the air temperature
# y_plus_air = ThoraxTemps_MinAvgMax_6[,6]
# y_minus_air = ThoraxTemps_MinAvgMax_6[,4]
# segments(x, y_minus_air,x, y_plus_air)
# segments(x-epsilon,y_plus_air,x+epsilon,y_plus_air)
# segments(x-epsilon,y_minus_air,x+epsilon,y_minus_air)
#
# y=ThoraxTemps_MinAvgMax_7[,2]
# y_plus = ThoraxTemps_MinAvgMax_7[,3]
# y_minus = ThoraxTemps_MinAvgMax_7[,1]
# #points(x, y,col=rainbow(12)[7])
# plot(x, y, ylim=y_range,col=rainbow(12)[7],xlab='time',ylab='thorax temp', main='Jul')
# segments(x, y_minus,x, y_plus,col=rainbow(12)[7])
# segments(x-epsilon,y_plus,x+epsilon,y_plus,col=rainbow(12)[7])
# segments(x-epsilon,y_minus,x+epsilon,y_minus,col=rainbow(12)[7])
# points(x,ThoraxTemps_MinAvgMax_7[,5]) #add the air temperature
# y_plus_air = ThoraxTemps_MinAvgMax_7[,6]
# y_minus_air = ThoraxTemps_MinAvgMax_7[,4]
# segments(x, y_minus_air,x, y_plus_air)
# segments(x-epsilon,y_plus_air,x+epsilon,y_plus_air)
# segments(x-epsilon,y_minus_air,x+epsilon,y_minus_air)
#
# y=ThoraxTemps_MinAvgMax_8[,2]
# y_plus = ThoraxTemps_MinAvgMax_8[,3]
# y_minus = ThoraxTemps_MinAvgMax_8[,1]
# #points(x, y,col=rainbow(12)[8])
# plot(x, y, ylim=y_range,col=rainbow(12)[8],xlab='time',ylab='thorax temp', main='Aug')
# segments(x, y_minus,x, y_plus,col=rainbow(12)[8])
# segments(x-epsilon,y_plus,x+epsilon,y_plus,col=rainbow(12)[8])
# segments(x-epsilon,y_minus,x+epsilon,y_minus,col=rainbow(12)[8])
# points(x,ThoraxTemps_MinAvgMax_8[,5]) #add the air temperature
# y_plus_air = ThoraxTemps_MinAvgMax_8[,6]
# y_minus_air = ThoraxTemps_MinAvgMax_8[,4]
# segments(x, y_minus_air,x, y_plus_air)
# segments(x-epsilon,y_plus_air,x+epsilon,y_plus_air)
# segments(x-epsilon,y_minus_air,x+epsilon,y_minus_air)
#
# y=ThoraxTemps_MinAvgMax_9[,2]
# y_plus = ThoraxTemps_MinAvgMax_9[,3]
# y_minus = ThoraxTemps_MinAvgMax_9[,1]
# #points(x, y,col=rainbow(12)[9])
# plot(x, y, ylim=y_range,col=rainbow(12)[9],xlab='time',ylab='thorax temp', main='Sep')
# segments(x, y_minus,x, y_plus,col=rainbow(12)[9])
# segments(x-epsilon,y_plus,x+epsilon,y_plus,col=rainbow(12)[9])
# segments(x-epsilon,y_minus,x+epsilon,y_minus,col=rainbow(12)[9])
# points(x,ThoraxTemps_MinAvgMax_9[,5]) #add the air temperature
# y_plus_air = ThoraxTemps_MinAvgMax_9[,6]
# y_minus_air = ThoraxTemps_MinAvgMax_9[,4]
# segments(x, y_minus_air,x, y_plus_air)
# segments(x-epsilon,y_plus_air,x+epsilon,y_plus_air)
# segments(x-epsilon,y_minus_air,x+epsilon,y_minus_air)
#
# y=ThoraxTemps_MinAvgMax_10[,2]
# y_plus = ThoraxTemps_MinAvgMax_10[,3]
# y_minus = ThoraxTemps_MinAvgMax_10[,1]
# #points(x, y,col=rainbow(12)[10])
# plot(x, y, ylim=y_range,col=rainbow(12)[10],xlab='time',ylab='thorax temp', main='Oct')
# segments(x, y_minus,x, y_plus,col=rainbow(12)[10])
# segments(x-epsilon,y_plus,x+epsilon,y_plus,col=rainbow(12)[10])
# segments(x-epsilon,y_minus,x+epsilon,y_minus,col=rainbow(12)[10])
# points(x,ThoraxTemps_MinAvgMax_10[,5]) #add the air temperature
# y_plus_air = ThoraxTemps_MinAvgMax_10[,6]
# y_minus_air = ThoraxTemps_MinAvgMax_10[,4]
# segments(x, y_minus_air,x, y_plus_air)
# segments(x-epsilon,y_plus_air,x+epsilon,y_plus_air)
# segments(x-epsilon,y_minus_air,x+epsilon,y_minus_air)
#
# y=ThoraxTemps_MinAvgMax_11[,2]
# y_plus = ThoraxTemps_MinAvgMax_11[,3]
# y_minus = ThoraxTemps_MinAvgMax_11[,1]
# #points(x, y,col=rainbow(12)[11])
# plot(x, y, ylim=y_range,col=rainbow(12)[11],xlab='time',ylab='thorax temp', main='Nov')
# segments(x, y_minus,x, y_plus,col=rainbow(12)[11])
# segments(x-epsilon,y_plus,x+epsilon,y_plus,col=rainbow(12)[11])
# segments(x-epsilon,y_minus,x+epsilon,y_minus,col=rainbow(12)[11])
# points(x,ThoraxTemps_MinAvgMax_11[,5]) #add the air temperature
# y_plus_air = ThoraxTemps_MinAvgMax_11[,6]
# y_minus_air = ThoraxTemps_MinAvgMax_11[,4]
# segments(x, y_minus_air,x, y_plus_air)
# segments(x-epsilon,y_plus_air,x+epsilon,y_plus_air)
# segments(x-epsilon,y_minus_air,x+epsilon,y_minus_air)
#
# y=ThoraxTemps_MinAvgMax_12[,2]
# y_plus = ThoraxTemps_MinAvgMax_12[,3]
# y_minus = ThoraxTemps_MinAvgMax_12[,1]
# #points(x, y,col=rainbow(12)[12])
# plot(x, y, ylim=y_range,col=rainbow(12)[12],xlab='time',ylab='thorax temp', main='Dec')
# segments(x, y_minus,x, y_plus,col=rainbow(12)[12])
# segments(x-epsilon,y_plus,x+epsilon,y_plus,col=rainbow(12)[12])
# segments(x-epsilon,y_minus,x+epsilon,y_minus,col=rainbow(12)[12])
# points(x,ThoraxTemps_MinAvgMax_12[,5]) #add the air temperature
# y_plus_air = ThoraxTemps_MinAvgMax_12[,6]
# y_minus_air = ThoraxTemps_MinAvgMax_12[,4]
# segments(x, y_minus_air,x, y_plus_air)
# segments(x-epsilon,y_plus_air,x+epsilon,y_plus_air)
# segments(x-epsilon,y_minus_air,x+epsilon,y_minus_air)
x=c(0,300,600,900,1200,1500,1800,2100)/100
epsilon = .5
y_range = c(0,44)
hours=3:8
y=Heatwave_Averages[,2]
y_plus = Heatwave_Averages[,3]
y_minus = Heatwave_Averages[,1]
#points(x, y, ylim=c(38,43),col=rainbow(12)[1])
plot(x[hours], y[hours], ylim=y_range,col=1,xlab='time (hours)',ylab='temperature (C)', main='2016 Heatwave Day Average')
segments(x[hours], y_minus[hours],x[hours], y_plus[hours],col=1)
segments(x[hours]-epsilon,y_plus[hours],x[hours]+epsilon,y_plus[hours],col=1)
segments(x[hours]-epsilon,y_minus[hours],x[hours]+epsilon,y_minus[hours],1)
points(x[hours],Heatwave_Averages[hours,5],col='blue') #add the air temperature
y_plus_air = Heatwave_Averages[,6]
y_minus_air = Heatwave_Averages[,4]
segments(x[hours], y_minus_air[hours],x[hours], y_plus_air[hours],col='blue')
segments(x[hours]-epsilon,y_plus_air[hours],x[hours]+epsilon,y_plus_air[hours],col='blue')
segments(x[hours]-epsilon,y_minus_air[hours],x[hours]+epsilon,y_minus_air[hours],col='blue')
# par(mfrow=c(1,2))
# matplot(BeeTemps[,1]/100,as.data.frame(YearData_ThoraxTemps_Low),
# type='b',lty=1,pch=20,col=rainbow(12), ylim = c(38,43),
# xlab = "Time (hrs)", ylab = "Equlibrium thorax temp (C)",main='Monthly Low')
# matplot(BeeTemps[,1]/100,as.data.frame(YearData_ThoraxTemps_High),
# type='b',lty=1,pch=20,col=rainbow(12), ylim = c(38,43),
# xlab = "Time (hrs)", ylab = "Equlibrium thorax temp (C)",main='Monthly High')
#plot(0,0,pch='.',axes='n')
#legend(-1,1,legend=format(ISOdate(2004,1:12,1),"%B"),col=rainbow(12),lty=1,pch=20)