diff --git a/easystacks/software.eessi.io/2023.06/grace/eessi-2023.06-eb-4.9.4-2022b.yml b/easystacks/software.eessi.io/2023.06/grace/eessi-2023.06-eb-4.9.4-2022b.yml index 4559147da8..1302be948f 100644 --- a/easystacks/software.eessi.io/2023.06/grace/eessi-2023.06-eb-4.9.4-2022b.yml +++ b/easystacks/software.eessi.io/2023.06/grace/eessi-2023.06-eb-4.9.4-2022b.yml @@ -87,7 +87,7 @@ easyconfigs: # options: # from-pr: 20238 - R-4.2.2-foss-2022b.eb -# from here on built originally with EB 4.9.0 +# from here on built originally with EB 4.9.1 # originally built with EB 4.9.1, PR 20379 was included since 4.9.2; no more # updates to the easyconfig since then # - R-bundle-Bioconductor-3.16-foss-2022b-R-4.2.2.eb: @@ -99,3 +99,58 @@ easyconfigs: - ASE-3.22.1-gfbf-2022b.eb - SEPP-4.5.1-foss-2022b.eb - Valgrind-3.21.0-gompi-2022b.eb +# from here on built originally with EB 4.9.2 + - BLAST+-2.14.0-gompi-2022b.eb +# originally built with EB 4.9.2; PR 21136 included since EB 4.9.3 +# - BioPerl-1.7.8-GCCcore-12.2.0.eb: +# options: +# # see https://github.com/easybuilders/easybuild-easyconfigs/pull/21136 +# from-commit: d8076ebaf8cb915762adebf88d385cc672b350dc + - BioPerl-1.7.8-GCCcore-12.2.0.eb + - gnuplot-5.4.6-GCCcore-12.2.0.eb + - h5py-3.8.0-foss-2022b.eb + - MDAnalysis-2.4.2-foss-2022b.eb + - ncbi-vdb-3.0.5-gompi-2022b.eb + - Bio-DB-HTS-3.01-GCC-12.2.0.eb + - MAFFT-7.505-GCC-12.2.0-with-extensions.eb + - MetaEuk-6-GCC-12.2.0.eb + - BamTools-2.5.2-GCC-12.2.0.eb + - Bio-SearchIO-hmmer-1.7.3-GCC-12.2.0.eb + - Mash-2.3-GCC-12.2.0.eb + - CapnProto-0.10.3-GCCcore-12.2.0.eb + - WhatsHap-2.1-foss-2022b.eb + - SAMtools-1.17-GCC-12.2.0.eb + - Bowtie2-2.5.1-GCC-12.2.0.eb + - CD-HIT-4.8.1-GCC-12.2.0.eb + - VCFtools-0.1.16-GCC-12.2.0.eb + - GenomeTools-1.6.2-GCC-12.2.0.eb + - Bio-SearchIO-hmmer-1.7.3-GCC-12.2.0.eb + - parallel-20230722-GCCcore-12.2.0.eb + - BCFtools-1.17-GCC-12.2.0.eb + - lpsolve-5.5.2.11-GCC-12.2.0.eb + - fastp-0.23.4-GCC-12.2.0.eb + - KronaTools-2.8.1-GCCcore-12.2.0.eb + - MultiQC-1.14-foss-2022b.eb + - CGAL-5.5.2-GCCcore-12.2.0.eb + - KaHIP-3.14-gompi-2022b.eb + - MPC-1.3.1-GCCcore-12.2.0.eb +# - MUMPS-5.6.1-foss-2022b-metis.eb +# - GL2PS-1.4.2-GCCcore-12.2.0.eb +# - GST-plugins-base-1.22.1-GCC-12.2.0.eb +# - wxWidgets-3.2.2.1-GCC-12.2.0.eb +# - Archive-Zip-1.68-GCCcore-12.2.0.eb +# - jemalloc-5.3.0-GCCcore-12.2.0.eb +# - Judy-1.0.5-GCCcore-12.2.0.eb +# - libaio-0.3.113-GCCcore-12.2.0.eb +# - Z3-4.12.2-GCCcore-12.2.0.eb +# - tbb-2021.10.0-GCCcore-12.2.0.eb +# - dask-2023.7.1-foss-2022b.eb +# - netcdf4-python-1.6.3-foss-2022b.eb +# - Ruby-3.2.2-GCCcore-12.2.0.eb +## originally built with EB 4.9.2; PR 21526 and PR 3467 included since EB 5.0.0, thus need to use *from-commit +# - ROOT-6.26.10-foss-2022b.eb: +# options: +# # see https://github.com/easybuilders/easybuild-easyconfigs/pull/21526 +# from-commit: 6cbfbd7d7a55dc7243f46d0beea510278f4718df +# # see https://github.com/easybuilders/easybuild-easyblocks/pull/3467 +# include-easyblocks-from-commit: c3aebe1f133d064a228c5d6c282e898b83d74601