Merge pull request #2835 from slevis-lmwg/ne3np4_to_defaults_and_makefile

ne3np4 to namelist_defaults_ctsm.xml and Makefile for PTS mode and add ability for warm starts in PTS mode

Author: slevis-lmwg

.git-blame-ignore-revs

@@ -27,6 +27,7 @@ d866510188d26d51bcd6d37239283db690af7e82
 e096358c832ab292ddfd22dd5878826c7c788968
 475831f0fb0e31e97f630eac4e078c886558b61c
 fd5f177131d63d39e79a13918390bdfb642d781e
+a51816e0de380300b69db9fc3e2c7fa83b267b64
 # Ran SystemTests and python/ctsm through black python formatter
 5364ad66eaceb55dde2d3d598fe4ce37ac83a93c
 8056ae649c1b37f5e10aaaac79005d6e3a8b2380
@@ -52,3 +53,4 @@ aa04d1f7d86cc2503b98b7e2b2d84dbfff6c316b
 045d90f1d80f713eb3ae0ac58f6c2352937f1eb0
 753fda3ff0147837231a73c9c728dd9ce47b5997
 f112ba0bbf96a61d5a4d354dc0dcbd8b0c68145c
+bd535c710db78420b8e8b9d71d88d8339e899c59

.gitmodules

@@ -28,79 +28,79 @@
 [submodule "fates"]
 path = src/fates
 url = https://github.com/NGEET/fates
-fxtag = sci.1.79.3_api.37.0.0
+fxtag = sci.1.80.4_api.37.0.0
 fxrequired = AlwaysRequired
 # Standard Fork to compare to with "git fleximod test" to ensure personal forks aren't committed
 fxDONOTUSEurl = https://github.com/NCAR/fates-release
 
 [submodule "cism"]
 path = components/cism
 url = https://github.com/ESCOMP/CISM-wrapper
-fxtag = cismwrap_2_2_002
+fxtag = cismwrap_2_2_005
 fxrequired = ToplevelRequired
 # Standard Fork to compare to with "git fleximod test" to ensure personal forks aren't committed
 fxDONOTUSEurl = https://github.com/ESCOMP/CISM-wrapper
 
 [submodule "rtm"]
 path = components/rtm
 url = https://github.com/ESCOMP/RTM
-fxtag = rtm1_0_80
+fxtag = rtm1_0_86
 fxrequired = ToplevelRequired
 # Standard Fork to compare to with "git fleximod test" to ensure personal forks aren't committed
 fxDONOTUSEurl = https://github.com/ESCOMP/RTM
 
 [submodule "mosart"]
 path = components/mosart
 url = https://github.com/ESCOMP/MOSART
-fxtag = mosart1.1.02
+fxtag = mosart1.1.07
 fxrequired = ToplevelRequired
 # Standard Fork to compare to with "git fleximod test" to ensure personal forks aren't committed
 fxDONOTUSEurl = https://github.com/ESCOMP/MOSART
 
 [submodule "mizuRoute"]
 path = components/mizuRoute
 url = https://github.com/ESCOMP/mizuRoute
-fxtag = cesm-coupling.n02_v2.1.3
+fxtag = cesm-coupling.n03_v2.2.0
 fxrequired = ToplevelRequired
 # Standard Fork to compare to with "git fleximod test" to ensure personal forks aren't committed
 fxDONOTUSEurl = https://github.com/ESCOMP/mizuRoute
 
 [submodule "ccs_config"]
 path = ccs_config
 url = https://github.com/ESMCI/ccs_config_cesm.git
-fxtag = ccs_config_cesm1.0.10
+fxtag = ccs_config_cesm1.0.16
 fxrequired = ToplevelRequired
 # Standard Fork to compare to with "git fleximod test" to ensure personal forks aren't committed
 fxDONOTUSEurl = https://github.com/ESMCI/ccs_config_cesm.git
 
 [submodule "cime"]
 path = cime
 url = https://github.com/ESMCI/cime
-fxtag = cime6.1.37
+fxtag = cime6.1.59
 fxrequired = ToplevelRequired
 # Standard Fork to compare to with "git fleximod test" to ensure personal forks aren't committed
 fxDONOTUSEurl = https://github.com/ESMCI/cime
 
 [submodule "cmeps"]
 path = components/cmeps
 url = https://github.com/ESCOMP/CMEPS.git
-fxtag = cmeps1.0.16
+fxtag = cmeps1.0.33
 fxrequired = ToplevelRequired
 # Standard Fork to compare to with "git fleximod test" to ensure personal forks aren't committed
 fxDONOTUSEurl = https://github.com/ESCOMP/CMEPS.git
 
 [submodule "cdeps"]
 path = components/cdeps
 url = https://github.com/ESCOMP/CDEPS.git
-fxtag = cdeps1.0.53
+fxtag = cdeps1.0.61
 fxrequired = ToplevelRequired
 # Standard Fork to compare to with "git fleximod test" to ensure personal forks aren't committed
 fxDONOTUSEurl = https://github.com/ESCOMP/CDEPS.git
 
 [submodule "share"]
 path = share
 url = https://github.com/ESCOMP/CESM_share
-fxtag = share1.1.2
+fxtag = share1.1.7
 fxrequired = ToplevelRequired
 # Standard Fork to compare to with "git fleximod test" to ensure personal forks aren't committed
 fxDONOTUSEurl = https://github.com/ESCOMP/CESM_share

README

@@ -126,9 +126,9 @@ cime_config/config_tests.xml ----- Define CTSM specific tests
 cime_config/config_pes.xml ------- Define Processor layouts for various CTSM grids and compsets
 cime_config/testdefs ------------- Directory for specification of CTSM testing
 cime_config/testdefs/ExpectedTestFails.xml -- List of tests that are expected to fail
-cime_config/usermods_dirs -------- Directories of sets of user-modification subdirs
+cime_config/usermods_dirs/clm ---- Directories of sets of user-modification subdirs
                                    (These are directories that add specific user modifications to
-                                    simulations created using "cime/scripts/create_newcase --user-mods-dir".)
+                                    simulations created using "cime/scripts/create_newcase --user-mods-dir clm/*)
 
 tools/mksurfdata_esmf --------- Directory to build program to create surface dataset 
                                 at any resolution.

WhatsNewInCTSM5.3.md

@@ -1,53 +1,48 @@
-Purpose and description of changes since ctsm5.2.005
-----------------------------------------------------
+# What's new in CTSM 5.3 (tag `ctsm5.3.0`)
 
-Bring in updates needed for the CESM3.0 science capability/functionality "chill". Most importantly bringing
-in: CN Matrix to speed up spinup for the BGC model, updated surface datasets, updated Leung 2023 dust emissions,
-explicit Air Conditioning for the Urban model, updates to crop calendars. For clm6_0 physics these options are now
-default turned on in addition to Sturm snow, and excess ice.
+## Purpose and description of changes since CTSM 5.2 (tag `ctsm5.2.005`)
+- Adds CN Matrix method to speed up spinup for the BGC model.
+- Updates surface datasets.
+- Brings in new Leung 2023 dust emissions.
+- Adds explicit air conditioning for the urban model.
+- Updates crop calendars.
+- Updates fire model with various improvements, including default parameterization against climate reanalysis from CRU-JRA instead of GSWP.
+- FATES compsets can now be run with transient land use.
 
-Changes to CTSM Infrastructure:
-===============================
+These changes were needed ahead of the CESM3 capability/functionality "chill". For `clm6_0` physics these options are now turned on by default, in addition to Sturm snow and excess ice.
 
- - manage_externals removed and replaced by git-fleximod
- - Ability to handle CAM7 in LND_TUNING_MODE
+## Changes to CTSM infrastructure
+ - `manage_externals` removed and replaced by `git-fleximod`
+ - Ability to handle CAM7 in `LND_TUNING_MODE`
 
-Changes to CTSM Answers:
-========================
+## Changes to CTSM answers
 
- Changes to defaults for clm6_0 physics:
+ Changes to defaults for `clm6_0` physics:
   - Urban explicit A/C turned on
-  - Snow thermal conductivity is now Sturm_1997
-  - New IC file for f09 1850
+  - Snow thermal conductivity method is now `Sturm_1997`
+  - New initial conditions file for f09 ("1-degree") 1850, with more in progress
   - New crop calendars
-  - Dust emissions is now Leung_2023
+  - Dust emissions method is now `Leung_2023`
   - Excess ice is turned on
-  - Updates to MEGAN for BVOC's
+  - Updates to MEGAN for BVOCs
   - Updates to BGC fire method
 
  Changes for all physics versions:
-
   - Parameter files updated
   - FATES parameter file updated
   - Glacier region 1 is now undefined
-  - Update in FATES transient Land use
+  - Update in FATES transient land use
   - Pass active glacier (CISM) runoff directly to river model (MOSART)
-  - Add the option for using matrix for Carbon/Nitrogen BGC spinup
+  - Add the option for using Matrix CN method for Carbon/Nitrogen BGC spinup
 
-New surface datasets:
-=====================
+## New surface datasets
 
-- With new surface datasets the following GLC fields have region "1" set to UNSET:
-     glacier_region_behavior, glacier_region_melt_behavior, glacier_region_ice_runoff_behavior
+- With new surface datasets the following GLC fields have region "1" set to UNSET: glacier_region_behavior, glacier_region_melt_behavior, glacier_region_ice_runoff_behavior
 - Updates to allow creating transient landuse timeseries files going back to 1700.
-- Fix an important bug on soil fields that was there since ctsm5.2.0. This results in mksurfdata_esmf now giving identical answers with a change in number of processors, as it should.
-- Add in creation of ne0np4.POLARCAP.ne30x4 surface datasets.
-- Add version to the surface datasets.
-- Remove the --hires_pft option from mksurfdata_esmf as we don't have the datasets for it.
-- Remove VIC fields from surface datasets.
-
-New input datasets to mksurfdata_esmf:
-======================================
-
-- Updates in PFT/LAI/soil-color raw datasets (now from the TRENDY2024 timeseries that ends in 2023), as well as two fire datasets (AG fire, peatland), and the glacier behavior dataset.
+- Fix an important bug on soil fields that was there since `ctsm5.2.0`. This has the side effect of `mksurfdata_esmf` now giving identical answers with a change in number of processors, as it should.
+- Surface datasets now provided for the `ne0np4.POLARCAP.ne30x4` grid.
+- Surface datasets now have their version number embedded to prevent mismatch of surface dataset and CTSM version.
+- Remove the `--hires_pft` option from `mksurfdata_esmf` as we don't have the datasets for it.
+- Remove `VIC` fields from surface datasets.
+- Updates to input datasets in PFT/LAI/soil-color raw datasets (now from the TRENDY2024 timeseries that ends in 2023), as well as two fire datasets (crop fire peak month, peatland fraction), and the glacier behavior dataset.
 

bld/CLMBuildNamelist.pm

@@ -3395,7 +3395,7 @@ sub setup_logic_mineral_nitrogen_dynamics {
   #
   my ($opts, $nl_flags, $definition, $defaults, $nl) = @_;
 
-  my @vars = ( "freelivfix_slope_wet", "freelivfix_intercept" );
+  my @vars = ( "freelivfix_slope_wet", "freelivfix_intercept", "nfix_method" );
   if (  &value_is_true($nl_flags->{'use_cn'}) && &value_is_true($nl->get_value('use_fun')) ) {
     foreach my $var ( @vars ) {
        add_default($opts, $nl_flags->{'inputdata_rootdir'}, $definition, $defaults, $nl, $var,
@@ -3408,6 +3408,7 @@ sub setup_logic_mineral_nitrogen_dynamics {
        }
     }
   }
+
 }
 
 
@@ -5208,6 +5209,7 @@ sub write_output_files {
   }
   push @groups, "clm_humanindex_inparm";
   push @groups, "cnmresp_inparm";
+  push @groups, "cnfun_inparm";
   push @groups, "photosyns_inparm";
   push @groups, "cnfire_inparm";
   push @groups, "cn_general";

bld/namelist_files/namelist_defaults_ctsm.xml

@@ -524,10 +524,9 @@ attributes from the config_cache.xml file (with keys converted to upper-case).
 <!-- The default filenames are given relative to the root directory
      for the CLM2 data in the CESM distribution -->
 <!-- Plant function types (relative to {csmdata}) -->
-<paramfile phys="clm6_0" >lnd/clm2/paramdata/ctsm60_params.c241017.nc</paramfile>
-<paramfile phys="clm5_1" >lnd/clm2/paramdata/ctsm51_params.c241017.nc</paramfile>
-<paramfile phys="clm5_0" >lnd/clm2/paramdata/clm50_params.c241017.nc</paramfile>
-<paramfile phys="clm4_5" >lnd/clm2/paramdata/clm45_params.c241017.nc</paramfile>
+<paramfile phys="clm6_0" >lnd/clm2/paramdata/ctsm60_params.c241119.nc</paramfile>
+<paramfile phys="clm5_0" >lnd/clm2/paramdata/clm50_params.c241119.nc</paramfile>
+<paramfile phys="clm4_5" >lnd/clm2/paramdata/clm45_params.c241119.nc</paramfile>
 
 <!-- ================================================================== -->
 <!-- FATES default parameter file                                       -->
@@ -1658,6 +1657,8 @@ lnd/clm2/surfdata_esmf/ctsm5.3.0/surfdata_mpasa480_hist_2000_78pfts_c240908.nc</
 <fsurdat hgrid="mpasa120"  sim_year="2000">
 lnd/clm2/surfdata_esmf/ctsm5.3.0/surfdata_mpasa120_hist_2000_78pfts_c240908.nc</fsurdat>
 
+<fsurdat hgrid="ne3np4"                  sim_year="2000">
+lnd/clm2/surfdata_esmf/ctsm5.3.0/surfdata_ne3np4_hist_2000_78pfts_c240925.nc</fsurdat>
 <fsurdat hgrid="ne3np4.pg3"              sim_year="2000">
 lnd/clm2/surfdata_esmf/ctsm5.3.0/surfdata_ne3np4.pg3_hist_2000_78pfts_c240908.nc</fsurdat>
 <fsurdat hgrid="ne120np4.pg3"             sim_year="2000">
@@ -1712,6 +1713,8 @@ lnd/clm2/surfdata_esmf/ctsm5.3.0/surfdata_ne30np4.pg2_hist_1850_78pfts_c240908.n
 lnd/clm2/surfdata_esmf/ctsm5.3.0/surfdata_ne30np4.pg3_hist_1850_78pfts_c240908.nc</fsurdat>
 <fsurdat hgrid="ne3np4.pg3"  sim_year="1850">
 lnd/clm2/surfdata_esmf/ctsm5.3.0/surfdata_ne3np4.pg3_hist_1850_78pfts_c240908.nc</fsurdat>
+<fsurdat hgrid="ne3np4"       sim_year="1850">
+lnd/clm2/surfdata_esmf/ctsm5.3.0/surfdata_ne3np4_hist_1850_78pfts_c240925.nc</fsurdat>
 
 <fsurdat hgrid="C96"  sim_year="1850">
 lnd/clm2/surfdata_esmf/ctsm5.3.0/surfdata_C96_hist_1850_78pfts_c240908.nc</fsurdat>
@@ -1722,8 +1725,6 @@ lnd/clm2/surfdata_esmf/ctsm5.3.0/synthetic/surfdata_1x1_cidadinhoBR_synth_hist_2
 <fsurdat hgrid="1x1_brazil"       sim_year="1850">
 lnd/clm2/surfdata_esmf/ctsm5.3.0/surfdata_1x1_brazil_hist_1850_78pfts_c240912.nc</fsurdat>
 
-<fsurdat hgrid="ne3np4.pg3"               sim_year="1850">
-lnd/clm2/surfdata_esmf/ctsm5.3.0/surfdata_ne3np4.pg3_hist_1850_78pfts_c240908.nc</fsurdat>
 <fsurdat hgrid="ne16np4.pg3"              sim_year="1850">
 lnd/clm2/surfdata_esmf/ctsm5.3.0/surfdata_ne16np4.pg3_hist_1850_78pfts_c240908.nc</fsurdat>
 <fsurdat hgrid="ne120np4.pg3"             sim_year="1850">
@@ -1794,6 +1795,8 @@ lnd/clm2/surfdata_esmf/NEON/ctsm5.3.0/surfdata_1x1_NEON_TOOL_hist_2000_78pfts_c2
 <flanduse_timeseries hgrid="mpasa120"      sim_year_range="1850-2000"
 >lnd/clm2/surfdata_esmf/ctsm5.3.0/landuse.timeseries_mpasa120_SSP2-4.5_1850-2100_78pfts_c240908.nc</flanduse_timeseries>
 
+<flanduse_timeseries hgrid="ne3np4"        sim_year_range="1850-2000"
+>lnd/clm2/surfdata_esmf/ctsm5.3.0/landuse.timeseries_ne3np4_SSP2-4.5_1850-2100_78pfts_c240926.nc</flanduse_timeseries>
 <flanduse_timeseries hgrid="ne3np4.pg3"    sim_year_range="1850-2000"
 >lnd/clm2/surfdata_esmf/ctsm5.3.0/landuse.timeseries_ne3np4.pg3_SSP2-4.5_1850-2100_78pfts_c240908.nc</flanduse_timeseries>
 <flanduse_timeseries hgrid="ne16np4.pg3"   sim_year_range="1850-2000"
@@ -1840,6 +1843,8 @@ lnd/clm2/surfdata_esmf/NEON/ctsm5.3.0/surfdata_1x1_NEON_TOOL_hist_2000_78pfts_c2
 <flanduse_timeseries hgrid="mpasa120"      sim_year_range="1850-2100" ssp_rcp="SSP2-4.5"
 >lnd/clm2/surfdata_esmf/ctsm5.3.0/landuse.timeseries_mpasa120_SSP2-4.5_1850-2100_78pfts_c240908.nc</flanduse_timeseries>
 
+<flanduse_timeseries hgrid="ne3np4"        sim_year_range="1850-2100" ssp_rcp="SSP2-4.5"
+>lnd/clm2/surfdata_esmf/ctsm5.3.0/landuse.timeseries_ne3np4_SSP2-4.5_1850-2100_78pfts_c240926.nc</flanduse_timeseries>
 <flanduse_timeseries hgrid="ne3np4.pg3"    sim_year_range="1850-2100" ssp_rcp="SSP2-4.5"
 >lnd/clm2/surfdata_esmf/ctsm5.3.0/landuse.timeseries_ne3np4.pg3_SSP2-4.5_1850-2100_78pfts_c240908.nc</flanduse_timeseries>
 <flanduse_timeseries hgrid="ne16np4.pg3"   sim_year_range="1850-2100" ssp_rcp="SSP2-4.5"
@@ -1900,6 +1905,8 @@ lnd/clm2/surfdata_esmf/NEON/ctsm5.3.0/surfdata_1x1_NEON_TOOL_hist_2000_78pfts_c2
 <freelivfix_intercept use_fun=".true." use_cn=".true.">0.0117d00</freelivfix_intercept>
 <freelivfix_slope_wet use_fun=".true." use_cn=".true.">0.0006d00</freelivfix_slope_wet>
 
+<nfix_method>Houlton</nfix_method>
+
 <br_root>0.83d-06</br_root>
 
 <!-- Scalar of leaf respiration to vcmax (used for SP mode and with luna) (could vary with physics version) -->

bld/namelist_files/namelist_definition_ctsm.xml

@@ -388,6 +388,11 @@ Slope of free living Nitrogen fixation with annual ET
 Intercept of free living Nitrogen fixation with zero annual ET
 </entry>
 
+<entry id="nfix_method" type="char*25" category="cnfun_inparm"
+       group="cnfun_inparm" valid_values="Houlton,Bytnerowicz" value="Houlton" >
+Choice of nfix parameterization
+</entry>
+
 <entry id="use_undercanopy_stability" type="logical" category="clm_physics"
        group="canopyfluxes_inparm" valid_values="" >
 If TRUE use the undercanopy stability term used with CLM4.5 (Sakaguchi&amp;Zeng, 2008)

bld/unit_testers/build-namelist_test.pl

@@ -368,7 +368,7 @@ sub cat_and_create_namelistinfile {
 my $phys = "clm6_0";
 $mode = "-phys $phys";
 &make_config_cache($phys);
-my $neondir      = "../../cime_config/usermods_dirs/NEON";
+my $neondir      = "../../cime_config/usermods_dirs/clm/NEON";
 foreach my $site ( "ABBY", "BLAN", "CPER", "DEJU", "GRSM", "HEAL", "KONA", "LENO", "NIWO",
                    "ONAQ", "PUUM", "SERC", "SRER", "TALL", "TREE", "WOOD", "BARR", "BONA",
                    "DCFS", "DELA", "GUAN", "JERC", "KONZ", "MLBS", "NOGP", "ORNL", "RMNP",
@@ -421,7 +421,7 @@ sub cat_and_create_namelistinfile {
 my $phys = "clm6_0";
 $mode = "-phys $phys";
 &make_config_cache($phys);
-my $plumdir      = "../../cime_config/usermods_dirs/PLUMBER2";
+my $plumdir      = "../../cime_config/usermods_dirs/clm/PLUMBER2";
 foreach my $site ( 
     "AR-SLu",  "AU-Emr",  "AU-TTE",  "CA-NS1",  "CA-SF3",  "CN-HaM",  "DE-Obe",  "ES-ES1",  "FR-Gri",  "IE-Dri",  "IT-LMa",  "IT-SRo",  "RU-Fyo",  "US-Aud",  "US-Ho1",  "US-Ne2",  "US-Syv",  "ZM-Mon",
     "AT-Neu",  "AU-Gin",  "AU-Tum",  "CA-NS2",  "CH-Cha",  "CN-Qia",  "DE-Seh",  "ES-ES2",  "FR-Hes",  "IT-Amp",  "IT-Mal",  "JP-SMF",  "RU-Zot",  "US-Bar",  "US-KS2",  "US-Ne3",  "US-Ton",
@@ -1490,7 +1490,7 @@ sub cat_and_create_namelistinfile {
 print "========================================================================\n";
 
 # Check for ALL resolutions with CLM50SP
-my @resolutions = ( "360x720cru", "10x15", "4x5", "0.9x1.25", "1.9x2.5", "ne3np4.pg3", "ne16np4.pg3", "ne30np4", "ne30np4.pg2", "ne30np4.pg3", "ne120np4.pg3", "ne0np4CONUS.ne30x8", "ne0np4.ARCTIC.ne30x4", "ne0np4.ARCTICGRIS.ne30x8", "C96", "mpasa480", "mpasa120" );
+my @resolutions = ( "360x720cru", "10x15", "4x5", "0.9x1.25", "1.9x2.5", "ne3np4", "ne3np4.pg3", "ne16np4.pg3", "ne30np4", "ne30np4.pg2", "ne30np4.pg3", "ne120np4.pg3", "ne0np4CONUS.ne30x8", "ne0np4.ARCTIC.ne30x4", "ne0np4.ARCTICGRIS.ne30x8", "C96", "mpasa480", "mpasa120" );
 my @only2000_resolutions = ( "1x1_numaIA", "1x1_brazil", "1x1_mexicocityMEX", "1x1_vancouverCAN", "1x1_urbanc_alpha", "5x5_amazon", "0.125nldas2", "mpasa60", "mpasa15", "mpasa3p75" );
 my @regional;
 foreach my $res ( @resolutions ) {
@@ -1527,7 +1527,7 @@ sub cat_and_create_namelistinfile {
 print " Test important resolutions for BGC and historical\n";
 print "==================================================\n";
 
-my @resolutions = ( "4x5", "10x15", "360x720cru", "ne30np4.pg3", "ne3np4.pg3", "1.9x2.5", "0.9x1.25", "C96", "mpasa120" );
+my @resolutions = ( "4x5", "10x15", "360x720cru", "ne30np4.pg3", "ne3np4", "ne3np4.pg3", "1.9x2.5", "0.9x1.25", "C96", "mpasa120" );
 my @regional;
 my $nlbgcmode = "bgc";
 my $mode = "$phys-$nlbgcmode";
@@ -1754,7 +1754,7 @@ sub cat_and_create_namelistinfile {
    &cleanup();
 }
 
-my @crop_res = ( "1x1_numaIA", "4x5", "10x15", "0.9x1.25", "1.9x2.5", "ne3np4.pg3", "ne30np4", "ne30np4.pg3", "C96", "mpasa120" );
+my @crop_res = ( "1x1_numaIA", "4x5", "10x15", "0.9x1.25", "1.9x2.5", "ne3np4", "ne3np4.pg3", "ne30np4", "ne30np4.pg3", "C96", "mpasa120" );
 foreach my $res ( @crop_res ) {
    $options = "-bgc bgc -crop -res $res -envxml_dir .";
    &make_env_run();
@@ -1843,7 +1843,7 @@ sub cat_and_create_namelistinfile {
    &cleanup();
 }
 # Transient ssp_rcp scenarios that work
-my @tran_res = ( "4x5", "0.9x1.25", "1.9x2.5", "10x15", "360x720cru", "ne3np4.pg3", "ne16np4.pg3", "ne30np4.pg3", "C96", "mpasa120" );
+my @tran_res = ( "4x5", "0.9x1.25", "1.9x2.5", "10x15", "360x720cru", "ne3np4", "ne3np4.pg3", "ne16np4.pg3", "ne30np4.pg3", "C96", "mpasa120" );
 foreach my $usecase ( "1850-2100_SSP2-4.5_transient" ) {
    my $startymd = 20150101;
    foreach my $res ( @tran_res ) {
@@ -1880,7 +1880,7 @@ sub cat_and_create_namelistinfile {
                      "-bgc bgc -clm_demand flanduse_timeseries -sim_year 1850-2000 -namelist '&a start_ymd=18500101/'",
                      "-bgc bgc -envxml_dir . -namelist '&a use_c13=.true.,use_c14=.true.,use_c14_bombspike=.true./'" );
   foreach my $clmopts ( @clmoptions ) {
-     my @clmres = ( "10x15", "4x5", "360x720cru", "0.9x1.25", "1.9x2.5", "ne3np4.pg3", "ne16np4.pg3", "ne30np4.pg3", "C96", "mpasa120" );
+     my @clmres = ( "10x15", "4x5", "360x720cru", "0.9x1.25", "1.9x2.5", "ne3np4", "ne3np4.pg3", "ne16np4.pg3", "ne30np4.pg3", "C96", "mpasa120" );
      foreach my $res ( @clmres ) {
         $options = "-res $res -envxml_dir . ";
         &make_env_run( );