Build Failing with NetCDF-C

[mchurchf]

I have been successfully building AMR-Wind and OpenFAST with netcdf using OneAPI as the compiler on CPU nodes, but I tried this today with the latest Exawind-Manager, and spack install fails at netcdf-c.

To get things ready for spack install, I do:

quick-create-dev -n env-amrwind-main-cpu-oneapi -s amr-wind+openfast+waves2amr+netcdf+hdf5%oneapi openfast+rosco+openmp%oneapi

Here is a bit of the error I see.

==> Installing netcdf-c-4.8.1-3jnpdhxhszpoewdcxqddyyr5xm6oviim [45/57]
==> Using cached archive: /home/mchurchf/.spack_downloads/_source-cache/archive/bc/bc018cc30d5da402622bf76462480664c6668b55eb16ba205a0dfb8647161dd0.tar.gz
==> Using cached archive: /home/mchurchf/.spack_downloads/_source-cache/archive/38/38d34de38bad99737d3308867071196f20a3fb39b936de7bfcfbc85eb0c7ef54
==> Applied patch https://github.com/Unidata/netcdf-c/commit/a7ea050ebb3c412a99cc352859d5176a9b5ef986.patch?full_index=1
==> netcdf-c: Executing phase: 'autoreconf'
==> netcdf-c: Executing phase: 'configure'
==> Error: ProcessError: Command exited with status 77:
    '/kfs3/scratch/mchurchf/exawind-manager/stage/spack-stage-netcdf-c-4.8.1-3jnpdhxhszpoewdcxqddyyr5xm6oviim/spack-src/configure' '--prefix=/kfs3/scratch/mchurchf/exawind-manager/spack/opt/spack/linux-x86_64/netcdf-c-4.8.1-3jnpdhxhszpoewdcxqddyyr5xm6oviim' '--enable-v2' '--enable-utilities' '--enable-static' '--enable-largefile' '--enable-hdf5' '--enable-nczarr' '--enable-parallel4' '--disable-pnetcdf' '--disable-hdf4' '--enable-shared' '--disable-dap' '--disable-byterange' '--disable-jna' '--disable-fsync' '--disable-logging' 'CC=/opt/cray/pe/mpich/8.1.28/ofi/gnu/10.3/bin/mpicc' 'ac_cv_search_deflate=' 'ac_cv_lib_zip_zip_open=no' 'ac_cv_lib_curl_curl_easy_setopt=no' 'ac_cv_prog_NC_M4=false' 'LDFLAGS=-L/kfs3/scratch/mchurchf/exawind-manager/spack/opt/spack/linux-x86_64/hdf5-1.14.4-3-ilcg5rioh4dtmiadg7npmwqpwz7wd55e/lib' 'LIBS='

15 errors found in build log:
     16     libtoolize: copying file 'm4/lt~obsolete.m4'
     17     autoreconf: configure.ac: not using Intltool
     18     autoreconf: configure.ac: not using Gtkdoc
     19     autoreconf: running: aclocal --force -I m4
     20     autoreconf: running: /kfs3/scratch/mchurchf/exawind-manager/spack/opt/spack/linux-sapphirerapids/autoconf-2.72-djkn7ixiaczbj6lxp52oxxi7aefbmq7f/bin/autoconf -
            -force
     21     configure.ac:1010: warning: The macro 'AC_HEADER_STDC' is obsolete.
  >> 22     configure.ac:1010: You should run autoupdate.
  >> 23     /kfs3/scratch/mchurchf/exawind-manager/stage/spack-stage-autoconf-2.72-djkn7ixiaczbj6lxp52oxxi7aefbmq7f/spack-src/lib/autoconf/headers.m4:663: AC_HEADER_STDC
            is expanded from...
  >> 24     configure.ac:1010: the top level
     25     configure.ac:1108: warning: The macro 'AC_STRUCT_ST_BLKSIZE' is obsolete.
  >> 26     configure.ac:1108: You should run autoupdate.
  >> 27     /kfs3/scratch/mchurchf/exawind-manager/stage/spack-stage-autoconf-2.72-djkn7ixiaczbj6lxp52oxxi7aefbmq7f/spack-src/lib/autoconf/types.m4:1029: AC_STRUCT_ST_BLK
            SIZE is expanded from...
  >> 28     configure.ac:1108: the top level