Merge pull request #26 from GEOS-ESM/develop

add setup_gaas_obs.pl from GMAO_Etc

Author: patricia-nasa

CHANGELOG.md

@@ -7,10 +7,13 @@
 
 ### Changed
 
+ 
 ## [v1.5.0] 2026-01-22
 ### Changed
 
 - Minor changes to get VIIRS to work in ADAS v5.43x
+- Move setup_gaas_obs.pl from GMAO_Etc here for consistency
+- chmod +x pl script
 
 ## [v1.4.0] 2025-12-03
 

src/Applications/GAAS_App/CMakeLists.txt

@@ -9,13 +9,19 @@ install(
    DESTINATION lib/Python
    )
 
-file(GLOB pcf_files *.pcf)
+file(GLOB perl_files CONFIGURE_DEPENDS *.pl)
+file(GLOB pcf_files CONFIGURE_DEPENDS *.pcf)
 
 install (
    FILES ${pcf_files}
    DESTINATION etc
    )
 
+install (
+   PROGRAMS ${perl_files}
+   DESTINATION bin
+   )
+
 ### MODIS 
 set(pythonscripts modis/modis_l2a.py modis/mxd04_l2a.py)
 install(PROGRAMS ${pythonscripts}  DESTINATION bin)

src/Applications/GAAS_App/setup_gaas_obs.pl

@@ -0,0 +1,106 @@
+#!/usr/bin/env perl
+#=======================================================================
+# name - setup_gaas_obs
+# purpose - organize GAAS observation data into subdirectories expected
+#           by the reading program
+#
+# runtime parameter
+# => $workdir: directory location of modis data
+#
+# runtime flags (choose at least one)
+# => $avhrr: organize avhrr patmosx data into subdirectories
+# => $modis: organize modis Level2 HDF data into subdirectories
+#=======================================================================
+use strict;
+use warnings;
+
+# global variables
+#-----------------
+my ($workdir, $modis, $viirs, $avhrr, %flags, $verbose);
+
+# main program
+#-------------
+{
+    use File::Basename ("basename");
+    use File::Copy ("move");
+    use File::Path ("mkpath");
+
+    my ($file, $base, $adflg);
+    my ($label, $Adate, $time, $version);
+    my ($type, $jdoy, $subdir);
+    my ($year, $month, $day);
+
+    init();
+    if ($modis) {
+        foreach $file (<$workdir/M?D04_L2.*.*.hdf>) {
+            $base = basename $file;
+            ($label, $Adate, $time, $version) = split /[\.]/, $base;
+
+            $type = substr($label, 0, 5);
+            $year = substr($Adate, 1, 4);
+            $jdoy = substr($Adate, 5, 3);
+
+            $subdir = "$workdir/$version/$type/$year/$jdoy";
+            unless (-d $subdir) {
+                mkpath($subdir, \%flags) or die "Error making dir: $subdir;";
+                system("touch $subdir/.no_archiving");
+            }
+            print "mv $file $subdir\n" if $verbose;
+            move($file, $subdir);
+        }
+    }
+
+    if ($avhrr) {
+        foreach $file (<$workdir/patmosx_v05r02.*.npz>) {
+            $base = basename $file;
+            ($label, $adflg, $Adate) = split /[\.]/, $base;
+
+            $year  = substr($Adate, 0, 4);
+            $month = substr($Adate, 4, 2);
+            $day   = substr($Adate, 6, 2);
+
+            $subdir = "$workdir/Y$year/M$month/D$day";
+            unless (-d $subdir) {
+                mkpath($subdir, \%flags) or die "Error making dir: $subdir;";
+                system("touch $subdir/.no_archiving");
+            }
+            print "mv $file $subdir\n" if $verbose;
+            move($file, $subdir);
+        }
+    }
+
+    if ($viirs) {
+        foreach $file (<$workdir/VN20AERD?_L2_VIIRS_NOAA20.*.*.nc>) {
+            $base = basename $file;
+            ($label, $Adate, $time, $version) = split /[\.]/, $base;
+
+            $type = substr($label, 0, 9);
+            $year = substr($Adate, 1, 4);
+            $jdoy = substr($Adate, 5, 3);
+
+            $subdir = "$workdir/${type}/$version/$year/$jdoy";
+            unless (-d $subdir) {
+                mkpath($subdir, \%flags) or die "Error making dir: $subdir;";
+                system("touch $subdir/.no_archiving");
+            }
+            print "mv $file $subdir\n" if $verbose;
+            move($file, $subdir);
+        }
+    }
+}
+
+#=======================================================================
+# name - init
+# purpose - get input parameters and flags
+#=======================================================================
+sub init {
+    use Getopt::Long;
+
+    GetOptions( "v"     => \$verbose,
+                "viirs" => \$viirs,
+                "modis" => \$modis,
+                "avhrr" => \$avhrr );
+    $workdir = shift @ARGV;
+
+    $flags{"verbose"} = 1 if $verbose;
+}