Vendor xz-decompress to avoid browser field stuff

Author: cmdcolin

package.json

@@ -50,28 +50,27 @@
   ],
   "dependencies": {
     "crc": "^4.3.2",
-    "generic-filehandle2": "^2.0.1",
+    "generic-filehandle2": "^2.0.10",
     "md5": "^2.2.1",
     "pako": "^1.0.4",
-    "quick-lru": "^4.0.1",
-    "xz-decompress": "^0.2.1"
+    "quick-lru": "^4.0.1"
   },
   "devDependencies": {
-    "@gmod/indexedfasta": "^4.0.1",
+    "@gmod/indexedfasta": "^4.0.6",
     "@types/md5": "^2.3.2",
     "@types/pako": "^1.0.3",
-    "@vitest/coverage-v8": "^3.0.1",
+    "@vitest/coverage-v8": "^3.2.3",
     "buffer": "^6.0.3",
     "documentation": "^14.0.3",
-    "eslint": "^9.9.0",
+    "eslint": "^9.28.0",
     "eslint-plugin-import": "^2.31.0",
     "eslint-plugin-unicorn": "^59.0.0",
     "mock-fs": "^5.2.0",
     "prettier": "^3.2.5",
     "rimraf": "^6.0.1",
     "typescript": "^5.7.0",
-    "typescript-eslint": "^8.31.1",
-    "vitest": "^3.0.1",
+    "typescript-eslint": "^8.34.0",
+    "vitest": "^3.2.3",
     "webpack": "^5.99.7",
     "webpack-cli": "^6.0.1"
   },

src/cramFile/file.ts

@@ -1,6 +1,6 @@
 import crc32 from 'crc/calculators/crc32'
 import QuickLRU from 'quick-lru'
-import { XzReadableStream } from 'xz-decompress'
+import { XzReadableStream } from './xz-decompress'
 
 import { CramMalformedError, CramUnimplementedError } from '../errors.ts'
 import * as htscodecs from '../htscodecs/index.ts'