v4.0.4

cmdcolin · cmdcolin · commit 73fa9a3f26df · 2026-01-17T18:58:13.000Z
diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -1,3 +1,9 @@
+## Changes since v4.0.3 (2026-01-10)
+
+### enhancement
+
+- Add selenium tests for jbrowse desktop (#5110) @cmdcolin
+
 ## Changes since v3.7.0 (2025-11-07)
 
 ### bug
diff --git a/packages/app-core/package.json b/packages/app-core/package.json
@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/app-core",
-  "version": "4.0.3",
+  "version": "4.0.4",
   "description": "JBrowse 2 code shared between the 'full featured' apps e.g. jbrowse-web and jbrowse-desktop",
   "keywords": [
     "jbrowse",
diff --git a/packages/core/package.json b/packages/core/package.json
@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/core",
-  "version": "4.0.3",
+  "version": "4.0.4",
   "type": "module",
   "description": "JBrowse 2 core libraries used by plugins",
   "keywords": [
diff --git a/packages/embedded-core/package.json b/packages/embedded-core/package.json
@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/embedded-core",
-  "version": "4.0.3",
+  "version": "4.0.4",
   "description": "JBrowse 2 code shared between embedded products",
   "keywords": [
     "jbrowse",
diff --git a/packages/product-core/package.json b/packages/product-core/package.json
@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/product-core",
-  "version": "4.0.3",
+  "version": "4.0.4",
   "sideEffects": false,
   "description": "JBrowse 2 code shared between products but not used by plugins",
   "keywords": [
diff --git a/packages/sv-core/package.json b/packages/sv-core/package.json
@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/sv-core",
-  "version": "4.0.3",
+  "version": "4.0.4",
   "description": "JBrowse 2 code shared between sv type code",
   "keywords": [
     "jbrowse",
diff --git a/packages/text-indexing/package.json b/packages/text-indexing/package.json
@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/text-indexing",
-  "version": "4.0.3",
+  "version": "4.0.4",
   "description": "JBrowse 2 text indexing for desktop",
   "keywords": [
     "jbrowse",
diff --git a/packages/web-core/package.json b/packages/web-core/package.json
@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/web-core",
-  "version": "4.0.3",
+  "version": "4.0.4",
   "description": "JBrowse 2 code shared between web-app type products",
   "keywords": [
     "jbrowse",
diff --git a/plugins/alignments/package.json b/plugins/alignments/package.json
@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/plugin-alignments",
-  "version": "4.0.3",
+  "version": "4.0.4",
   "description": "JBrowse 2 alignments adapters, tracks, etc.",
   "keywords": [
     "jbrowse",
diff --git a/plugins/arc/package.json b/plugins/arc/package.json
@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/plugin-arc",
-  "version": "4.0.3",
+  "version": "4.0.4",
   "description": "JBrowse 2 arc adapters, tracks, etc.",
   "keywords": [
     "jbrowse",
diff --git a/plugins/authentication/package.json b/plugins/authentication/package.json
@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/plugin-authentication",
-  "version": "4.0.3",
+  "version": "4.0.4",
   "description": "JBrowse 2 Authentication",
   "keywords": [
     "jbrowse",
diff --git a/plugins/bed/package.json b/plugins/bed/package.json
@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/plugin-bed",
-  "version": "4.0.3",
+  "version": "4.0.4",
   "description": "JBrowse 2 bed adapters, tracks, etc.",
   "keywords": [
     "jbrowse",
diff --git a/plugins/breakpoint-split-view/package.json b/plugins/breakpoint-split-view/package.json
@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/plugin-breakpoint-split-view",
-  "version": "4.0.3",
+  "version": "4.0.4",
   "description": "JBrowse 2 breakpoint detail split view",
   "keywords": [
     "jbrowse",
diff --git a/plugins/canvas/package.json b/plugins/canvas/package.json
@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/plugin-canvas",
-  "version": "4.0.3",
+  "version": "4.0.4",
   "description": "JBrowse 2 plugin for canvas features",
   "keywords": [
     "jbrowse",
diff --git a/plugins/circular-view/package.json b/plugins/circular-view/package.json
@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/plugin-circular-view",
-  "version": "4.0.3",
+  "version": "4.0.4",
   "description": "JBrowse 2 circular view",
   "keywords": [
     "jbrowse",
diff --git a/plugins/comparative-adapters/package.json b/plugins/comparative-adapters/package.json
@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/plugin-comparative-adapters",
-  "version": "4.0.3",
+  "version": "4.0.4",
   "description": "JBrowse 2 comparative adapters",
   "keywords": [
     "jbrowse",
diff --git a/plugins/config/package.json b/plugins/config/package.json
@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/plugin-config",
-  "version": "4.0.3",
+  "version": "4.0.4",
   "description": "JBrowse 2 config utilities",
   "keywords": [
     "jbrowse",
diff --git a/plugins/data-management/package.json b/plugins/data-management/package.json
@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/plugin-data-management",
-  "version": "4.0.3",
+  "version": "4.0.4",
   "description": "JBrowse 2 linear genome view",
   "keywords": [
     "jbrowse",
diff --git a/plugins/dotplot-view/package.json b/plugins/dotplot-view/package.json
@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/plugin-dotplot-view",
-  "version": "4.0.3",
+  "version": "4.0.4",
   "description": "JBrowse 2 dotplot view",
   "keywords": [
     "jbrowse",
diff --git a/plugins/gccontent/package.json b/plugins/gccontent/package.json
@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/plugin-gccontent",
-  "version": "4.0.3",
+  "version": "4.0.4",
   "description": "JBrowse 2 gccontent concepts",
   "keywords": [
     "jbrowse",
diff --git a/plugins/gff3/package.json b/plugins/gff3/package.json
@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/plugin-gff3",
-  "version": "4.0.3",
+  "version": "4.0.4",
   "description": "JBrowse 2 gff3.",
   "keywords": [
     "jbrowse",
diff --git a/plugins/grid-bookmark/package.json b/plugins/grid-bookmark/package.json
@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/plugin-grid-bookmark",
-  "version": "4.0.3",
+  "version": "4.0.4",
   "description": "JBrowse 2 grid bookmark widget",
   "keywords": [
     "jbrowse",
diff --git a/plugins/gtf/package.json b/plugins/gtf/package.json
@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/plugin-gtf",
-  "version": "4.0.3",
+  "version": "4.0.4",
   "description": "JBrowse 2 gtf feature adapter",
   "keywords": [
     "jbrowse",
diff --git a/plugins/hic/package.json b/plugins/hic/package.json
@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/plugin-hic",
-  "version": "4.0.3",
+  "version": "4.0.4",
   "description": "JBrowse 2 hic adapters, tracks, etc.",
   "keywords": [
     "jbrowse",
diff --git a/plugins/jobs-management/package.json b/plugins/jobs-management/package.json
@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/plugin-jobs-management",
-  "version": "4.0.3",
+  "version": "4.0.4",
   "description": "JBrowse 2 jobs management",
   "keywords": [
     "jbrowse",
diff --git a/plugins/legacy-jbrowse/package.json b/plugins/legacy-jbrowse/package.json
@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/plugin-legacy-jbrowse",
-  "version": "4.0.3",
+  "version": "4.0.4",
   "description": "JBrowse 2 plugin for connecting to and reading JBrowse 1 data",
   "keywords": [
     "jbrowse",
diff --git a/plugins/linear-comparative-view/package.json b/plugins/linear-comparative-view/package.json
@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/plugin-linear-comparative-view",
-  "version": "4.0.3",
+  "version": "4.0.4",
   "description": "JBrowse 2 linear comparative view",
   "keywords": [
     "jbrowse",
diff --git a/plugins/linear-genome-view/package.json b/plugins/linear-genome-view/package.json
@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/plugin-linear-genome-view",
-  "version": "4.0.3",
+  "version": "4.0.4",
   "description": "JBrowse 2 linear genome view",
   "keywords": [
     "jbrowse",
diff --git a/plugins/lollipop/package.json b/plugins/lollipop/package.json
@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/plugin-lollipop",
-  "version": "4.0.3",
+  "version": "4.0.4",
   "description": "JBrowse 2 plugin for lollipops",
   "keywords": [
     "jbrowse",
diff --git a/plugins/menus/package.json b/plugins/menus/package.json
@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/plugin-menus",
-  "version": "4.0.3",
+  "version": "4.0.4",
   "description": "JBrowse 2 basic menus",
   "keywords": [
     "jbrowse",
diff --git a/plugins/rdf/package.json b/plugins/rdf/package.json
@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/plugin-rdf",
-  "version": "4.0.3",
+  "version": "4.0.4",
   "description": "JBrowse 2 RDF resources",
   "keywords": [
     "jbrowse",
diff --git a/plugins/sequence/package.json b/plugins/sequence/package.json
@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/plugin-sequence",
-  "version": "4.0.3",
+  "version": "4.0.4",
   "description": "JBrowse 2 sequence adapters, tracks, etc.",
   "keywords": [
     "jbrowse",
diff --git a/plugins/spreadsheet-view/package.json b/plugins/spreadsheet-view/package.json
@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/plugin-spreadsheet-view",
-  "version": "4.0.3",
+  "version": "4.0.4",
   "description": "JBrowse 2 spreadsheet view",
   "keywords": [
     "jbrowse",
diff --git a/plugins/sv-inspector/package.json b/plugins/sv-inspector/package.json
@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/plugin-sv-inspector",
-  "version": "4.0.3",
+  "version": "4.0.4",
   "description": "JBrowse 2 SV inspector view",
   "keywords": [
     "jbrowse",
diff --git a/plugins/text-indexing/package.json b/plugins/text-indexing/package.json
@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/plugin-text-indexing",
-  "version": "4.0.3",
+  "version": "4.0.4",
   "description": "JBrowse 2 text indexing rpc method",
   "keywords": [
     "jbrowse",
diff --git a/plugins/trix/package.json b/plugins/trix/package.json
@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/plugin-trix",
-  "version": "4.0.3",
+  "version": "4.0.4",
   "description": "JBrowse 2 trix text search adapter",
   "keywords": [
     "jbrowse",
diff --git a/plugins/variants/package.json b/plugins/variants/package.json
@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/plugin-variants",
-  "version": "4.0.3",
+  "version": "4.0.4",
   "description": "JBrowse 2 variant adapters, tracks, etc.",
   "keywords": [
     "jbrowse",
diff --git a/plugins/wiggle/package.json b/plugins/wiggle/package.json
@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/plugin-wiggle",
-  "version": "4.0.3",
+  "version": "4.0.4",
   "description": "JBrowse 2 wiggle adapters, tracks, etc.",
   "keywords": [
     "jbrowse",
diff --git a/products/jbrowse-cli/package.json b/products/jbrowse-cli/package.json
@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/cli",
-  "version": "4.0.3",
+  "version": "4.0.4",
   "description": "A command line tool for working with JBrowse 2",
   "keywords": [
     "jbrowse",
diff --git a/products/jbrowse-desktop/package.json b/products/jbrowse-desktop/package.json
@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/desktop",
-  "version": "4.0.3",
+  "version": "4.0.4",
   "type": "module",
   "description": "JBrowse desktop application specialized to inspect structural variants",
   "license": "Apache-2.0",
diff --git a/products/jbrowse-img/package.json b/products/jbrowse-img/package.json
@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/img",
-  "version": "4.0.3",
+  "version": "4.0.4",
   "main": "dist/index.js",
   "types": "dist/index.d.ts",
   "exports": {
diff --git a/products/jbrowse-react-app/package.json b/products/jbrowse-react-app/package.json
@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/react-app2",
-  "version": "4.0.3",
+  "version": "4.0.4",
   "description": "JBrowse 2 app React component",
   "keywords": [
     "jbrowse",
diff --git a/products/jbrowse-react-circular-genome-view/package.json b/products/jbrowse-react-circular-genome-view/package.json
@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/react-circular-genome-view2",
-  "version": "4.0.3",
+  "version": "4.0.4",
   "description": "JBrowse 2 circular genome view React component",
   "keywords": [
     "jbrowse",
diff --git a/products/jbrowse-react-linear-genome-view/package.json b/products/jbrowse-react-linear-genome-view/package.json
@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/react-linear-genome-view2",
-  "version": "4.0.3",
+  "version": "4.0.4",
   "description": "JBrowse 2 linear genome view React component",
   "keywords": [
     "jbrowse",
diff --git a/products/jbrowse-web/package.json b/products/jbrowse-web/package.json
@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/web",
-  "version": "4.0.3",
+  "version": "4.0.4",
   "type": "module",
   "license": "Apache-2.0",
   "homepage": ".",
diff --git a/website/blog/2026-01-17-v4.0.4-release.md b/website/blog/2026-01-17-v4.0.4-release.md
@@ -0,0 +1,22 @@
+---
+title: v4.0.4 Release
+date: 2026-01-17 18:57:39
+tags: ['release', 'jbrowse 2']
+---
+
+New release
+
+## Downloads
+
+- [v4.0.4](https://github.com/GMOD/jbrowse-components/releases/tag/v4.0.4)
+
+To install JBrowse 2 for the web, you can download the link above, or you can
+use the JBrowse CLI to automatically download the latest version. See the
+[JBrowse web quick start](https://jbrowse.org/jb2/docs/quickstart_web) for more
+details.
+
+## Changes since v4.0.3 (2026-01-10)
+
+### enhancement
+
+- Add selenium tests for jbrowse desktop (#5110) @cmdcolin
diff --git a/website/docusaurus.config.json b/website/docusaurus.config.json
@@ -8,6 +8,6 @@
   "organizationName": "GMOD",
   "projectName": "jbrowse-components",
   "customFields": {
-    "currentVersion": "v4.0.3"
+    "currentVersion": "v4.0.4"
   }
 }

Original file line number	Diff line number	Diff line change
`@@ -1,6 +1,6 @@`
`1`	`1`	`{`
`2`	`2`	`"name": "@jbrowse/app-core",`
`3`		`- "version": "4.0.3",`
	`3`	`+ "version": "4.0.4",`
`4`	`4`	`"description": "JBrowse 2 code shared between the 'full featured' apps e.g. jbrowse-web and jbrowse-desktop",`
`5`	`5`	`"keywords": [`
`6`	`6`	`"jbrowse",`
Original file line number	Diff line number	Diff line change
`@@ -1,6 +1,6 @@`
`1`	`1`	`{`
`2`	`2`	`"name": "@jbrowse/core",`
`3`		`- "version": "4.0.3",`
	`3`	`+ "version": "4.0.4",`
`4`	`4`	`"type": "module",`
`5`	`5`	`"description": "JBrowse 2 core libraries used by plugins",`
`6`	`6`	`"keywords": [`
Original file line number	Diff line number	Diff line change
`@@ -1,6 +1,6 @@`
`1`	`1`	`{`
`2`	`2`	`"name": "@jbrowse/embedded-core",`
`3`		`- "version": "4.0.3",`
	`3`	`+ "version": "4.0.4",`
`4`	`4`	`"description": "JBrowse 2 code shared between embedded products",`
`5`	`5`	`"keywords": [`
`6`	`6`	`"jbrowse",`
Original file line number	Diff line number	Diff line change
`@@ -1,6 +1,6 @@`
`1`	`1`	`{`
`2`	`2`	`"name": "@jbrowse/product-core",`
`3`		`- "version": "4.0.3",`
	`3`	`+ "version": "4.0.4",`
`4`	`4`	`"sideEffects": false,`
`5`	`5`	`"description": "JBrowse 2 code shared between products but not used by plugins",`
`6`	`6`	`"keywords": [`
Original file line number	Diff line number	Diff line change
`@@ -1,6 +1,6 @@`
`1`	`1`	`{`
`2`	`2`	`"name": "@jbrowse/sv-core",`
`3`		`- "version": "4.0.3",`
	`3`	`+ "version": "4.0.4",`
`4`	`4`	`"description": "JBrowse 2 code shared between sv type code",`
`5`	`5`	`"keywords": [`
`6`	`6`	`"jbrowse",`
Original file line number	Diff line number	Diff line change
`@@ -1,6 +1,6 @@`
`1`	`1`	`{`
`2`	`2`	`"name": "@jbrowse/text-indexing",`
`3`		`- "version": "4.0.3",`
	`3`	`+ "version": "4.0.4",`
`4`	`4`	`"description": "JBrowse 2 text indexing for desktop",`
`5`	`5`	`"keywords": [`
`6`	`6`	`"jbrowse",`
Original file line number	Diff line number	Diff line change
`@@ -1,6 +1,6 @@`
`1`	`1`	`{`
`2`	`2`	`"name": "@jbrowse/web-core",`
`3`		`- "version": "4.0.3",`
	`3`	`+ "version": "4.0.4",`
`4`	`4`	`"description": "JBrowse 2 code shared between web-app type products",`
`5`	`5`	`"keywords": [`
`6`	`6`	`"jbrowse",`
Original file line number	Diff line number	Diff line change
`@@ -1,6 +1,6 @@`
`1`	`1`	`{`
`2`	`2`	`"name": "@jbrowse/plugin-alignments",`
`3`		`- "version": "4.0.3",`
	`3`	`+ "version": "4.0.4",`
`4`	`4`	`"description": "JBrowse 2 alignments adapters, tracks, etc.",`
`5`	`5`	`"keywords": [`
`6`	`6`	`"jbrowse",`
Original file line number	Diff line number	Diff line change
`@@ -1,6 +1,6 @@`
`1`	`1`	`{`
`2`	`2`	`"name": "@jbrowse/plugin-arc",`
`3`		`- "version": "4.0.3",`
	`3`	`+ "version": "4.0.4",`
`4`	`4`	`"description": "JBrowse 2 arc adapters, tracks, etc.",`
`5`	`5`	`"keywords": [`
`6`	`6`	`"jbrowse",`