update version of Organisms v3.3

Author: Geoffrey Weal

.readthedocs.yml

@@ -19,6 +19,7 @@ python:
   install:
     - requirements: Documentation/source/requirements1.txt
     - requirements: Documentation/source/requirements2.txt
+    - requirements: Documentation/source/requirements3.txt
 
 # Optionally build your docs in additional formats such as PDF and ePub
 # formats:

Documentation/source/requirements3.txt

@@ -0,0 +1,14 @@
+# File: docs/requirements.txt
+# Notes from https://docs.readthedocs.io/en/stable/guides/reproducible-builds.html#using-a-configuration-file
+# and https://readthedocs.org/projects/sphinx-rtd-tutorial/downloads/pdf/latest/
+
+sphinx-rtd-theme
+sphinxcontrib-applehelp
+sphinxcontrib-devhelp
+sphinxcontrib-htmlhelp
+sphinxcontrib-jsmath
+sphinxcontrib-qthelp
+sphinxcontrib-serializinghtml
+sphinxcontrib-wiki
+sphinx-tabs
+sphinxcontrib-plantuml

setup.py

@@ -65,7 +65,7 @@ def find_scripts():
       download_url = 'https://github.com/GardenGroupUO/Organisms/archive/v'+str(get_version_number())+'.tar.gz',
       license='GNU AFFERO GENERAL PUBLIC LICENSE',
       zip_safe=False,
-      keywords = ['nanoclusters', 'nanoparticles', 'clusters', 'optimisation', 'genetic-algorithm', 'ase', 'university-of-otago', 'asap3', 'atomic-simulation-environment', 'jupyter-binder', 'predation-operator', 'fitness-operator', 'otago-university', 'common-neighbor-analysis', 'common-neighbour-analysis'],
+      keywords = ['nanoclusters', 'nanoparticles', 'clusters', 'optimisation', 'genetic-algorithm', 'ase', 'university-of-otago', 'asap3', 'atomic-simulation-environment', 'predation-operator', 'fitness-operator', 'otago-university', 'common-neighbor-analysis', 'common-neighbour-analysis', 'jupyter', 'Colabs', 'Google Golabs'],
       install_requires=[
           'numpy','scipy','ase','packaging','termcolor','tqdm'
           #'Sphinx','sphinx-rtd-theme','sphinx-tabs','sphinxcontrib-applehelp','sphinxcontrib-devhelp',