Use latest vcpkg commit in configuration, sync manifest with deps.txt (microsoft#23554)

### Description

`python3` dependency is removed in `onnx` port of
https://github.com/microsoft/vcpkg upstream.

* microsoft/vcpkg#43236
*
microsoft#23285 (comment)
(Previous work)

Removed `nsync`, and use ONNX 1.70.0+ in vcpkg.json(manifest)

### Motivation and Context

* Help microsoft#23158
* microsoft#23456

Author: luncliff

cmake/vcpkg-configuration.json

@@ -2,7 +2,7 @@
     "default-registry": {
         "kind": "git",
         "repository": "https://github.com/Microsoft/vcpkg",
-        "baseline": "93570a28ecdf49d3d9676cec8aa0cc72935d43db"
+        "baseline": "d504de05dcd7b55df34976be1c824324ec6bca2b"
     },
     "registries": []
 }

cmake/vcpkg-ports/onnx/fix-cmakelists.patch

@@ -1,7 +1,7 @@
 {
   "$schema": "https://raw.githubusercontent.com/microsoft/vcpkg-tool/main/docs/vcpkg.schema.json",
   "name": "onnxruntime",
-  "version-date": "2024-09-10",
+  "version-date": "2025-01-31",
   "description": "ONNX Runtime: cross-platform, high performance ML inferencing and training accelerator",
   "homepage": "https://onnxruntime.ai/",
   "license": "MIT",
@@ -30,14 +30,9 @@
     },
     "ms-gsl",
     "nlohmann-json",
-    {
-      "name": "nsync",
-      "platform": "!windows",
-      "version>=": "1.26.0"
-    },
     {
       "name": "onnx",
-      "version>=": "1.16.2"
+      "version>=": "1.17.0"
     },
     "optional-lite",
     {
@@ -82,7 +77,7 @@
     },
     {
       "name": "flatbuffers",
-      "version": "23.5.26"
+      "version": "23.5.26#1"
     }
   ]
 }