Update to structure and content

Author: kipkurui

Data/Salinispora_tropica_CNB_440.gbk

@@ -0,0 +1,98 @@
+>NM_002299.4 Homo sapiens lactase (LCT), mRNA
+GAAAATGGAGCTGTCTTGGCATGTAGTCTTTATTGCCCTGCTAAGTTTTTCATGCTGGGG
+GTCAGACTGGGAGTCTGATAGAAATTTCATTTCCACCGCTGGTCCTCTAACCAATGACTT
+GCTGCACAACCTGAGTGGTCTCCTGGGAGACCAGAGTTCTAACTTTGTAGCAGGGGACAA
+AGACATGTATGTTTGTCACCAGCCACTGCCCACTTTCCTGCCAGAATACTTCAGCAGTCT
+CCATGCCAGTCAGATCACCCATTATAAGGTATTTCTGTCATGGGCACAGCTCCTCCCAGC
+AGGAAGCACCCAGAATCCAGACGAGAAAACAGTGCAGTGCTACCGGCGACTCCTCAAGGC
+CCTCAAGACTGCACGGCTTCAGCCCATGGTCATCCTGCACCACCAGACCCTCCCTGCCAG
+CACCCTCCGGAGAACCGAAGCCTTTGCTGACCTCTTCGCCGACTATGCCACATTCGCCTT
+CCACTCCTTCGGGGACCTAGTTGGGATCTGGTTCACCTTCAGTGACTTGGAGGAAGTGAT
+CAAGGAGCTTCCCCACCAGGAATCAAGAGCGTCACAACTCCAGACCCTCAGTGATGCCCA
+CAGAAAAGCCTATGAGATTTACCACGAAAGCTATGCTTTTCAGGGCGGAAAACTCTCTGT
+TGTCCTGCGAGCTGAAGATATCCCGGAGCTCCTGCTAGAACCACCCATATCTGCGCTTGC
+CCAGGACACGGTCGATTTCCTCTCTCTTGATTTGTCTTATGAATGCCAAAATGAGGCAAG
+TCTGCGGCAGAAGCTGAGTAAATTGCAGACCATTGAGCCAAAAGTGAAAGTTTTCATCTT
+CAACCTAAAACTCCCAGACTGCCCCTCCACCATGAAGAACCCAGCCAGTCTGCTCTTCAG
+CCTTTTTGAAGCCATAAATAAAGACCAAGTGCTCACCATTGGGTTTGATATTAATGAGTT
+TCTGAGTTGTTCATCAAGTTCCAAGAAAAGCATGTCTTGTTCTCTGACTGGCAGCCTGGC
+CCTTCAGCCTGACCAGCAGCAGGACCACGAGACCACGGACTCCTCTCCTGCCTCTGCCTA
+TCAGAGAATCTGGGAAGCATTTGCCAATCAGTCCAGGGCGGAAAGGGATGCCTTCCTGCA
+GGATACTTTCCCTGAAGGCTTCCTCTGGGGTGCCTCCACAGGAGCCTTTAACGTGGAAGG
+AGGCTGGGCCGAGGGTGGGAGAGGGGTGAGCATCTGGGATCCACGCAGGCCCCTGAACAC
+CACTGAGGGCCAAGCGACGCTGGAGGTGGCCAGCGACAGTTACCACAAGGTAGCCTCTGA
+CGTCGCCCTGCTTTGCGGCCTCCGGGCTCAGGTGTACAAGTTCTCCATCTCCTGGTCCCG
+GATCTTCCCCATGGGGCACGGGAGCAGCCCCAGCCTCCCAGGCGTTGCCTACTACAACAA
+GCTGATTGACAGGCTACAGGATGCGGGCATCGAGCCCATGGCCACGCTGTTCCACTGGGA
+CCTGCCTCAGGCCCTGCAGGATCATGGTGGATGGCAGAATGAGAGCGTGGTGGATGCCTT
+CCTGGACTATGCGGCCTTCTGCTTCTCCACATTTGGGGACCGTGTGAAGCTGTGGGTGAC
+CTTCCATGAGCCGTGGGTGATGAGCTACGCAGGCTATGGCACCGGCCAGCACCCTCCCGG
+CATCTCTGACCCAGGAGTGGCCTCTTTTAAGGTGGCTCACTTGGTCCTCAAGGCTCATGC
+CAGAACTTGGCACCACTACAACAGCCATCATCGCCCACAGCAGCAGGGGCACGTGGGCAT
+TGTGCTGAACTCAGACTGGGCAGAACCCCTGTCTCCAGAGAGGCCTGAGGACCTGAGAGC
+CTCTGAGCGCTTCTTGCACTTCATGCTGGGCTGGTTTGCACACCCCGTCTTTGTGGATGG
+AGACTACCCAGCCACCCTGAGGACCCAGATCCAACAGATGAACAGACAGTGCTCCCATCC
+TGTGGCTCAACTCCCCGAGTTCACAGAGGCAGAGAAGCAGCTCCTGAAAGGCTCTGCTGA
+TTTTCTGGGTCTGTCGCATTACACCTCCCGCCTCATCAGCAACGCCCCACAAAACACCTG
+CATCCCTAGCTATGATACCATTGGAGGCTTCTCCCAACACGTGAACCATGTGTGGCCCCA
+GACCTCATCCTCTTGGATTCGTGTGGTGCCCTGGGGGATAAGGAGGCTGTTGCAGTTTGT
+ATCCCTGGAATACACAAGAGGAAAAGTTCCAATATACCTTGCCGGGAATGGCATGCCCAT
+AGGGGAAAGTGAAAATCTCTTTGATGATTCCTTAAGAGTAGACTACTTCAATCAATATAT
+CAATGAGGTGCTCAAGGCTATCAAGGAAGACTCTGTGGATGTTCGTTCCTACATTGCTCG
+TTCCCTCATTGATGGCTTCGAAGGCCCTTCTGGTTACAGCCAGCGGTTTGGCCTGCACCA
+CGTCAACTTCAGCGACAGCAGCAAGTCAAGGACTCCCAGGAAATCTGCCTACTTTTTCAC
+TAGCATCATAGAAAAGAACGGTTTCCTCACCAAGGGGGCAAAAAGACTGCTACCACCTAA
+TACAGTAAACCTCCCCTCCAAAGTCAGAGCCTTCACTTTTCCATCTGAGGTGCCCTCCAA
+GGCTAAAGTCGTTTGGGAAAAGTTCTCCAGCCAACCCAAGTTCGAAAGAGATTTGTTCTA
+CCACGGGACGTTTCGGGATGACTTTCTGTGGGGCGTGTCCTCTTCCGCTTATCAGATTGA
+AGGCGCGTGGGATGCCGATGGCAAAGGCCCCAGCATCTGGGATAACTTTACCCACACACC
+AGGGAGCAATGTGAAAGACAATGCCACTGGAGACATCGCCTGTGACAGCTATCACCAGCT
+GGATGCCGATCTGAATATGCTCCGAGCTTTGAAGGTGAAGGCCTACCGCTTCTCTATCTC
+CTGGTCTCGGATTTTCCCAACTGGGAGAAACAGCTCTATCAACAGTCATGGGGTTGATTA
+TTACAACAGGCTGATCAATGGCTTGGTGGCAAGCAACATCTTTCCCATGGTGACATTGTT
+CCATTGGGACCTGCCCCAGGCCCTCCAGGATATCGGAGGCTGGGAGAATCCTGCCTTGAT
+TGACTTGTTTGACAGCTACGCAGACTTTTGTTTCCAGACCTTTGGTGATAGAGTCAAGTT
+TTGGATGACTTTTAATGAGCCCATGTACCTGGCATGGCTAGGTTATGGCTCAGGGGAATT
+TCCCCCAGGGGTGAAGGACCCAGGCTGGGCACCATATAGGATAGCCCACGCCGTCATCAA
+AGCCCATGCCAGAGTCTATCACACGTACGATGAGAAATACAGGCAGGAGCAGAAGGGGGT
+CATCTCGCTGAGCCTCAGTACACACTGGGCAGAGCCCAAGTCACCAGGGGTCCCCAGAGA
+TGTGGAAGCCGCTGACCGAATGCTGCAGTTCTCCCTGGGCTGGTTTGCTCACCCCATTTT
+TAGAAACGGAGACTATCCTGACACCATGAAGTGGAAAGTGGGGAACAGGAGTGAACTGCA
+GCACTTAGCCACCTCCCGCCTGCCAAGCTTCACTGAGGAAGAGAAGAGGTTCATCAGGGC
+GACGGCCGACGTCTTCTGCCTCAACACGTACTACTCCAGAATCGTGCAGCACAAAACACC
+CAGGCTAAACCCACCCTCCTACGAAGACGACCAGGAGATGGCTGAGGAGGAGGACCCTTC
+GTGGCCTTCCACGGCAATGAACAGAGCTGCGCCCTGGGGGACGCGAAGGCTGCTGAACTG
+GATCAAGGAAGAGTATGGTGACATCCCCATTTACATCACCGAAAACGGAGTGGGGCTGAC
+CAATCCGAACACGGAGGATACTGATAGGATATTTTACCACAAAACCTACATCAATGAGGC
+TTTGAAAGCCTACAGGCTCGATGGTATAGACCTTCGAGGGTATGTCGCCTGGTCTCTGAT
+GGACAACTTTGAGTGGCTAAATGGCTACACGGTCAAGTTTGGACTGTACCATGTTGATTT
+CAACAACACGAACAGGCCTCGCACAGCAAGAGCCTCCGCCAGGTACTACACAGAGGTCAT
+TACCAACAACGGCATGCCACTGGCCAGGGAGGATGAGTTTCTGTACGGACGGTTTCCTGA
+GGGCTTCATCTGGAGTGCAGCTTCTGCTGCATATCAGATTGAAGGTGCGTGGAGAGCAGA
+TGGCAAAGGACTCAGCATTTGGGACACGTTTTCTCACACACCACTGAGGGTTGAGAACGA
+TGCCATTGGAGACGTGGCCTGTGACAGTTATCACAAGATTGCTGAGGATCTGGTCACCCT
+GCAGAACCTGGGCGTGTCCCACTACCGTTTTTCCATCTCCTGGTCTCGCATCCTCCCTGA
+TGGAACCACCAGGTACATCAATGAAGCGGGCCTGAACTACTACGTGAGGCTCATCGATAC
+ACTGCTGGCCGCCAGCATCCAGCCCCAGGTGACCATTTACCACTGGGACCTACCACAGAC
+GCTCCAAGATGTAGGAGGCTGGGAGAATGAGACCATCGTGCAGCGGTTTAAGGAGTATGC
+AGATGTGCTCTTCCAGAGGCTGGGAGACAAGGTGAAGTTTTGGATCACGCTGAATGAGCC
+CTTTGTCATTGCTTACCAGGGCTATGGCTACGGAACAGCAGCTCCAGGAGTCTCCAATAG
+GCCTGGCACTGCCCCCTACATTGTTGGCCACAATCTAATAAAGGCTCATGCTGAGGCCTG
+GCATCTGTACAACGATGTGTACCGCGCCAGTCAAGGTGGCGTGATTTCCATCACCATCAG
+CAGTGACTGGGCTGAACCCAGAGATCCCTCTAACCAGGAGGATGTGGAGGCAGCCAGGAG
+ATATGTTCAGTTCATGGGAGGCTGGTTTGCACATCCTATTTTCAAGAATGGAGATTACAA
+TGAGGTGATGAAGACGCGGATCCGTGACAGGAGCTTGGCTGCAGGCCTCAACAAGTCTCG
+GCTGCCAGAATTTACAGAGAGTGAGAAGAGGAGGATCAACGGCACCTATGACTTTTTTGG
+GTTCAATCACTACACCACTGTCCTCGCCTACAACCTCAACTATGCCACTGCCATCTCTTC
+TTTTGATGCAGACAGAGGAGTTGCTTCCATCGCAGATCGCTCGTGGCCAGACTCTGGCTC
+CTTCTGGCTGAAGATGACGCCTTTTGGCTTCAGGAGGATCCTGAACTGGTTAAAGGAGGA
+ATACAATGACCCTCCAATTTATGTCACAGAGAATGGAGTGTCCCAGCGGGAAGAAACAGA
+CCTCAATGACACTGCAAGGATCTACTACCTTCGGACTTACATCAATGAGGCCCTCAAAGC
+TGTGCAGGACAAGGTGGACCTTCGAGGATACACAGTTTGGAGTGCGATGGACAATTTTGA
+GTGGGCCACAGGCTTTTCAGAGAGATTTGGTCTGCATTTTGTGAACTACAGTGACCCTTC
+TCTGCCAAGGATCCCCAAAGCATCAGCGAAGTTCTACGCCTCTGTGGTCCGATGCAATGG
+CTTCCCTGACCCCGCTACAGGGCCTCACGCTTGTCTCCACCAGCCAGATGCTGGACCCAC
+CATCAGCCCCGTGAGACAGGAGGAGGTGCAGTTCCTGGGGCTAATGCTCGGCACCACAGA
+AGCACAGACAGCTTTGTACGTTCTCTTTTCTCTTGTGCTTCTTGGAGTCTGTGGCTTGGC
+ATTTCTGTCATACAAGTACTGCAAGCGCTCTAAGCAAGGGAAAACACAACGAAGCCAACA
+GGAATTGAGCCCGGTGTCTTCATT

Data/Streptomyces_coelicolor.fa

@@ -13,7 +13,7 @@
     "## Attribution\n",
     "These tutorials are an adaptation of the Introduction to Python for Maths by [Andreas Ernst](http://users.monash.edu.au/~andreas), available from https://gitlab.erc.monash.edu.au/andrease/Python4Maths.git. The original version was written by Rajath Kumar and is available at https://github.com/rajathkumarmp/Python-Lectures.\n",
     "\n",
-    "These notes have been greatly amended and updated for the EANBiT Introduction to Python for Bioinformatics course facilitated [Caleb Kibet](https://twitter.com/calkibet), Audrey Mbogho and Anthony Etuk. \n",
+    "These notes have been greatly amended and updated for the MSC Bioinformatics and Molecular Biology at Pwani university, sponsored by EANBiT by [Caleb Kibet](https://twitter.com/calkibet)\n",
     "</small></small></i>\n",
     "\n",
     "# Quick Introduction to Jupyter Notebooks\n",
@@ -104,20 +104,21 @@
     "\n",
     "This course is broken up into a number of notebooks (lectures).\n",
     "### Session 1\n",
-    "* [00](Intro-to-Python/00.ipynb) This introduction with additional information below on how to get started in running python\n",
-    "* [01](Intro-to-Python/01.ipynb) Basic data types and operations (numbers, strings) \n",
+    "* [01](01.ipynb) Basic data types and operations (numbers, strings) \n",
+    "* [02](02.ipynb) String manipulation \n",
     "\n",
     "### Session 2\n",
-    "* [02](02.ipynb) String manipulation \n",
-    "* [03](Intro-to-Python/03.ipynb) Data structures: Lists and Tuples\n",
-    "* [04](Intro-to-Python/04.ipynb) Data structures (continued): dictionaries\n",
+    "* [03](03.ipynb) Data structures: Lists and Tuples\n",
+    "* [04](04.ipynb) Data structures (continued): dictionaries\n",
     "\n",
     "### Session 3\n",
-    "* [05](Intro-to-Python/05.ipynb) Control statements: if, for, while, try statements\n",
-    "* [06](Intro-to-Python/06.ipynb) Functions\n",
-    "* [07](Intro-to-Python/07.ipynb) Files, Scripting and Modules\n",
-    "* [08](Intro-to-Python/08.ipynb) Data Analysis and plotting with Pandas\n",
-    "* [09](Intro-to-Python/09.ipynb) Reproducible Bioinformatics Research\n",
+    "* [05](05.ipynb) Control statements: if, for, while, try statements\n",
+    "* [06](06.ipynb) Functions\n",
+    "* [07](07.ipynb) Files, Scripting and Modules\n",
+    "### Session 4\n",
+    "* [08](08.ipynb) Data Analysis and plotting with Pandas\n",
+    "* [09](09.ipynb) Reproducible Bioinformatics Research\n",
+    "* [10](10.ipynb) Introduction to Biopython\n",
     "\n",
     "This is a tutorial style introduction to Python. For a quick reminder/summary of Python syntax, the following [Quick Reference Card](http://www.cs.put.poznan.pl/csobaniec/software/python/py-qrc.html) may be useful. A longer and more detailed tutorial style introduction to python is available from the python site at: https://docs.python.org/3/tutorial/.\n",
     "\n",
@@ -171,7 +172,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.6.4"
+   "version": "3.6.8"
   }
  },
  "nbformat": 4,