TASK_parrec.Rmd

---
title:
runtime: shiny
output: html_document
keep_md: no
---
  
```{r engine='bash', echo=FALSE}
ID=`grep -e 'Patient name' PROJECTDIR/subjects/SUBID/sessionNO/parrec/TASK.PAR | awk '{print $5}'`
VOL=`grep -e 'Max. number of dynamics' PROJECTDIR/subjects/SUBID/sessionNO/parrec/TASK.PAR |  awk '{print $7}'`
TR=`grep -e 'Repetition time' PROJECTDIR/subjects/SUBID/sessionNO/parrec/TASK.PAR | awk '{print $6}'`
TE=`tail -3 PROJECTDIR/subjects/SUBID/sessionNO/parrec/TASK.PAR | head -1 | awk {'print $31'}`
DIR=`grep -e 'Preparation direction' PROJECTDIR/subjects/SUBID/sessionNO/parrec/TASK.PAR | awk {'print $5'}`
FOV=`grep -e 'FOV' PROJECTDIR/subjects/SUBID/sessionNO/parrec/TASK.PAR | awk {'print $6'}`
PixelSpacingX=`tail -3 PROJECTDIR/subjects/SUBID/sessionNO/parrec/TASK.PAR | head -1 | awk {'print $29'}`
PixelSpacingY=`tail -3 PROJECTDIR/subjects/SUBID/sessionNO/parrec/TASK.PAR | head -1 | awk {'print $30'}`
echo "Subject ID                 :  $ID"
echo "No. of Volumes             :  $VOL"
echo "Repetition Time            :  $TR"
echo "Echo Time                  :  $TE"
echo "Preperation Direction      :  $DIR"
echo "FOV                        :  $FOV"
echo "Pixel Spacing (x,y in mm)  :  $PixelSpacingX x $PixelSpacingY"
```