diff --git a/INSTALL b/INSTALL index 6eb7d34..987a8b9 100644 --- a/INSTALL +++ b/INSTALL @@ -12,6 +12,13 @@ OS: This distribution will only work on *NIX type systems at present. Other Software + For installation to proceed you require the following packages: + + zlib1g-dev + g++ + dh-autoreconf + libncurses-dev + setup.sh will install biobambam bwa (v0.7.7) diff --git a/Makefile.PL b/Makefile.PL index 4d65e32..5cb9fa6 100644 --- a/Makefile.PL +++ b/Makefile.PL @@ -44,7 +44,8 @@ WriteMakefile( 'File::Which' => 0.05, 'List::Util' => 1.38, 'Proc::ProcessTable' => 0.50, - 'Data::UUID' => 0, + 'Data::UUID' => 1.219, + 'Test::Fatal' => 0.013, } ); diff --git a/setup.sh b/setup.sh index ed19dca..6d779ba 100755 --- a/setup.sh +++ b/setup.sh @@ -7,6 +7,7 @@ done_message () { fi else echo " failed. See setup.log file for error messages." $2 + echo " Please check INSTALL file for items that should be installed by a package manager" exit 1 fi } @@ -84,7 +85,7 @@ cd $SETUP_DIR; if [[ ",$COMPILE," == *,bwa,* ]] ; then echo -n "Building BWA ..." if [ -e $SETUP_DIR/bwa.success ]; then - echo "previously installed" + echo -n " previously installed ..." else ( set -e; @@ -112,7 +113,7 @@ fi if [[ ",$COMPILE," == *,biobambam,* ]] ; then echo -n "Building snappy ..." if [ -e $SETUP_DIR/snappy.success ]; then - echo "previously installed" + echo -n " previously installed ..." else ( set -e; @@ -137,7 +138,7 @@ if [[ ",$COMPILE," == *,biobambam,* ]] ; then echo -n "Building io_lib ..." if [ -e $SETUP_DIR/io_lib.success ]; then - echo "previously installed" + echo -n " previously installed ... " else ( set -e; @@ -162,7 +163,7 @@ if [[ ",$COMPILE," == *,biobambam,* ]] ; then echo -n "Building libmaus ..." if [ -e $SETUP_DIR/libmaus.success ]; then - echo "previously installed" + echo -n " previously installed ..." else ( set -e; @@ -188,7 +189,7 @@ if [[ ",$COMPILE," == *,biobambam,* ]] ; then echo -n "Building biobambam ..." if [ -e $SETUP_DIR/biobambam.success ]; then - echo "previously installed" + echo -n "previously installed ..." else ( set -e;