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If you wish to clean up your area of all built/generated (i.e. not under version control) files ready to do a complete rebuild, type:
git clean -fdx git submodule foreach "git clean -fdx"
If you also wish to discard all uncommitted changes to any files in all directories, type:
git reset --hard git submodule foreach --recursive "git reset --hard"
If appropriate, you can then do an update from the main git repository to get any recent changes:
git pull git submodule sync git submodule update