🪐 QuPath Extension Server Kit

Connect to an Imaging Server Kit server and run algorithms in QuPath.

qupath_screencast.webm

Installation

Drag and drop the latest extension jar file from the Releases page into the main QuPath window, then restart QuPath. The extension is compatible with QuPath version 0.5.0 and above.

Usage

1. Make sure you have an algorithm server up and running that you can connect to.

2. Connect to the server via Extensions > Imaging Server Kit > Connect.... Enter the server URL (by default, http://localhost:8000) and click "Connect".

3. This should populate the sub-menu Extensions > Imaging Server Kit with the available algorithms.

4. Open an image and create an annotation on it. Use Ctrl+Shift+A to create an annotation on the whole image.

5. Select one of the available algorithm from the extension sub-menu. A window to set parameters for the selected algorithm will be displayed. Click "Run" to run the algorithm on the selected annotation.

For developers: build the project

This is a Gradle project. Build it using the Gradle command: ./gradlew clean build (for Linux and MacOS) or ./gradlew clean build for Windows. The build is then found in: build/libs/qupath-extension-serverkit-[version].jar