From 48fc77aa898b4d8db5ed4989f3d916a3f05a4e5c Mon Sep 17 00:00:00 2001 From: Jana Sperschneider Date: Fri, 19 Jan 2018 09:01:29 +0800 Subject: [PATCH] Updated README --- LICENCE.txt | 2 +- README.txt | 20 ++++++++++---------- Scripts/EffectorP.py | 2 +- Scripts/functions.py | 2 +- 4 files changed, 13 insertions(+), 13 deletions(-) diff --git a/LICENCE.txt b/LICENCE.txt index 90497f5..82eeba4 100644 --- a/LICENCE.txt +++ b/LICENCE.txt @@ -25,7 +25,7 @@ ___________________________________________________________________ EMBOSS (http://emboss.sourceforge.net/) This software is licensed under GNU GPL. -WEKA 3.6.12 (http://sourceforge.net/projects/weka/) +WEKA 3.8.1 (http://sourceforge.net/projects/weka/) This software is licensed under GNU GPL. ___________________________________________________________________ diff --git a/README.txt b/README.txt index 9ad050b..0559b8e 100644 --- a/README.txt +++ b/README.txt @@ -1,21 +1,21 @@ ----------------------------------------------------------------------------------------------------------- ----------------------------------------------------------------------------------------------------------- -EffectorP: predicting fungal effector proteins from secretomes using machine learning -Copyright (C) 2015-2016 Jana Sperschneider +Improved prediction of fungal effector proteins from secretomes with EffectorP 2.0 +Copyright (C) 2017-2018 Jana Sperschneider Contact: jana.sperschneider@csiro.au ----------------------------------------------------------------------------------------------------------- ----------------------------------------------------------------------------------------------------------- -Installation instructions for EffectorP 1.0 +Installation instructions for EffectorP 2.0 ----------------------------------------------------------------------------------------------------------- ----------------------------------------------------------------------------------------------------------- -EffectorP relies on two tools, the EMBOSS software and the WEKA 3.6 software. These have been shipped +EffectorP relies on two tools, the EMBOSS software and the WEKA 3.8.1 software. These have been shipped with the EffectorP 1.0.tar.gz file, but they need to be installed by the user. -1) Extract the EffectorP 1.0 archive: +1) Extract the EffectorP 2.0 archive: ----------------------------------------- -tar xvf EffectorP_1.0.tar.gz -cd EffectorP_1.0 +tar xvf EffectorP_2.0.tar.gz +cd EffectorP_2.0 ----------------------------------------- 2) Install EMBOSS @@ -29,15 +29,15 @@ make cd ../ ----------------------------------------- -3) Install WEKA: simply unzip the file weka-3-6-12.zip +3) Install WEKA: simply unzip the file weka-3-8-1.zip ----------------------------------------- -unzip weka-3-6-12.zip +unzip weka-3-8-1.zip ----------------------------------------- 3) Run EffectorP -To test that EffectorP is working, type the following command in the working directory EffectorP_1.0/Scripts +To test that EffectorP is working, type the following command in the working directory EffectorP_2.0/Scripts ----------------------------------------- python EffectorP.py -i Effector_Testing.fasta diff --git a/Scripts/EffectorP.py b/Scripts/EffectorP.py index 3d6a259..5907737 100644 --- a/Scripts/EffectorP.py +++ b/Scripts/EffectorP.py @@ -1,6 +1,6 @@ #! /usr/bin/python """ - EffectorP 2.0: predicting fungal effector proteins from secretomes using machine learning + Improved prediction of fungal effector proteins from secretomes with EffectorP 2.0 Copyright (C) 2017-2018 Jana Sperschneider This program is free software; you can redistribute it and/or modify diff --git a/Scripts/functions.py b/Scripts/functions.py index 1247150..8549d91 100644 --- a/Scripts/functions.py +++ b/Scripts/functions.py @@ -1,6 +1,6 @@ #!/usr/bin/env python """ - EffectorP 2.0: predicting fungal effector proteins from secretomes using machine learning + Improved prediction of fungal effector proteins from secretomes with EffectorP 2.0 Copyright (C) 2017-2018 Jana Sperschneider This program is free software; you can redistribute it and/or modify