variousKernelInstallations.ipynb

{
 "cells": [
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "# Various Kernel Installations\n",
    "### Table of Contents\n",
    "* [Installing Ruby Kernel](#ruby_kernel)\n",
    "* [Installing Javascript Kernel](#javascript_kernel)\n",
    "* [Installing Scilab Kernel](#scilab_kernel)\n",
    "* [Installing Tcl Kernel](#tcl_kernel)\n",
    "* [Installing Gnuplot Kernel](#gnuplot_kernel)\n",
    "* [Installing Octave Kernel](#octave_kernel)\n",
    "* [Installing Fortran Kernel](#fortran_kernel)"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "After removing anaconda (to get root-notebook working), many old notebooks didn't run properly. For example, pandas, gnuplot etc were missing, even Cpp11, cpp14 etc didn't work.\n",
    "\n",
    "``` \n",
    "Krishna's FunPrompt $  history\n",
    "...\n",
    "...\n",
    "501  pip2 install virtualenvwrapper\n",
    "  502  brew install freetype\n",
    "  503  which freetype\n",
    "  504  brew install libxml2\n",
    "  505  pip install numpy scipy matplotlib pandas nltk ipython\n",
    "  506  pip2 install numpy scipy matplotlib pandas nltk ipython\n",
    "Krishna's FunPrompt $ \n",
    "```\n",
    "\n",
    "(Reference: http://nerderati.com/2014/09/03/installing-matplotlib-numpy-scipy-nltk-and-pandas-on-os-x-without-going-crazy/)"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "<a id='ruby_kernel'></a>\n",
    "## Installing Ruby Kernel\n",
    "\n",
    "First of all, I saw that my machine already had ruby installed. Not sure if it comes preinstalled or I did it along the way.\n",
    "```\n",
    "Krishna's FunPrompt $ which ruby\n",
    "/usr/bin/ruby\n",
    "Krishna's FunPrompt $ \n",
    "```"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "```\n",
    "Krishna's FunPrompt $ brew install rbenv automake gmp libtool wget\n",
    "Warning: rbenv 1.1.1 is already installed\n",
    "Warning: automake 1.15.1 is already installed\n",
    "Warning: gmp 6.1.2 is already installed\n",
    "Warning: libtool 2.4.6_1 is already installed\n",
    "Warning: wget 1.19.1_1 is already installed\n",
    "Krishna's FunPrompt $\n",
    "```"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "```\n",
    "Krishna's FunPrompt $ rbenv install 2.4.1\n",
    "rbenv: /Users/kpadhikari/.rbenv/versions/2.4.1 already exists\n",
    "continue with installation? (y/N) y\n",
    "ruby-build: use openssl from homebrew\n",
    "Downloading ruby-2.4.1.tar.bz2...\n",
    "-> https://cache.ruby-lang.org/pub/ruby/2.4/ruby-2.4.1.tar.bz2\n",
    "Installing ruby-2.4.1...\n",
    "ruby-build: use readline from homebrew\n",
    "Installed ruby-2.4.1 to /Users/kpadhikari/.rbenv/versions/2.4.1\n",
    "\n",
    "Krishna's FunPrompt $ rbenv global 2.4.1\n",
    "Krishna's FunPrompt $ echo 'eval \"$(rbenv init -)\"' >> ~/.bashrc\n",
    "Krishna's FunPrompt $ echo 'eval \"$(rbenv init -)\"'\n",
    "eval \"$(rbenv init -)\"\n",
    "Krishna's FunPrompt $ e .bashrc &\n",
    "[1] 77661\n",
    "Krishna's FunPrompt $ eval \"$(rbenv init -)\"\n",
    "Krishna's FunPrompt $ brew install zeromq\n",
    "Updating Homebrew...\n",
    "==> Auto-updated Homebrew!\n",
    "Updated 1 tap (homebrew/core).\n",
    "==> Updated Formulae\n",
    "ponyc\n",
    "\n",
    "Warning: zeromq 4.2.2 is already installed\n",
    "Krishna's FunPrompt $  brew install czmq --HEAD\n",
    "Warning: czmq HEAD-fdb6579 is already installed\n",
    "Krishna's FunPrompt $ gem install cztop iruby\n",
    "Fetching: ffi-1.9.18.gem (100%)\n",
    "Building native extensions.  This could take a while...\n",
    "Successfully installed ffi-1.9.18\n",
    "Fetching: czmq-ffi-gen-0.13.0.gem (100%)\n",
    "Successfully installed czmq-ffi-gen-0.13.0\n",
    "Fetching: cztop-0.11.4.gem (100%)\n",
    "Successfully installed cztop-0.11.4\n",
    "Parsing documentation for ffi-1.9.18\n",
    "Installing ri documentation for ffi-1.9.18\n",
    "Parsing documentation for czmq-ffi-gen-0.13.0\n",
    "Installing ri documentation for czmq-ffi-gen-0.13.0\n",
    "Parsing documentation for cztop-0.11.4\n",
    "Installing ri documentation for cztop-0.11.4\n",
    "Done installing documentation for ffi, czmq-ffi-gen, cztop after 22 seconds\n",
    "Fetching: bond-0.5.1.gem (100%)\n",
    "Building native extensions.  This could take a while...\n",
    "Successfully installed bond-0.5.1\n",
    "Fetching: multi_json-1.12.1.gem (100%)\n",
    "Successfully installed multi_json-1.12.1\n",
    "Fetching: mimemagic-0.3.2.gem (100%)\n",
    "Successfully installed mimemagic-0.3.2\n",
    "Fetching: data_uri-0.1.0.gem (100%)\n",
    "Successfully installed data_uri-0.1.0\n",
    "Fetching: iruby-0.3.gem (100%)\n",
    "Consider installing the optional dependencies to get additional functionality:\n",
    "  * pry\n",
    "  * pry-doc\n",
    "  * awesome_print\n",
    "  * gnuplot\n",
    "  * rubyvis\n",
    "  * nyaplot\n",
    "\n",
    "Successfully installed iruby-0.3\n",
    "Parsing documentation for bond-0.5.1\n",
    "Installing ri documentation for bond-0.5.1\n",
    "Parsing documentation for multi_json-1.12.1\n",
    "Installing ri documentation for multi_json-1.12.1\n",
    "Parsing documentation for mimemagic-0.3.2\n",
    "Installing ri documentation for mimemagic-0.3.2\n",
    "Parsing documentation for data_uri-0.1.0\n",
    "Installing ri documentation for data_uri-0.1.0\n",
    "Parsing documentation for iruby-0.3\n",
    "Installing ri documentation for iruby-0.3\n",
    "Done installing documentation for bond, multi_json, mimemagic, data_uri, iruby after 1 seconds\n",
    "8 gems installed\n",
    "Krishna's FunPrompt $ which iruby\n",
    "/Users/kpadhikari/.rbenv/shims/iruby\n",
    "Krishna's FunPrompt $ iruby register --force\n",
    "Krishna's FunPrompt $ which ruby\n",
    "/Users/kpadhikari/.rbenv/shims/ruby\n",
    "Krishna's FunPrompt $ ruby --version\n",
    "ruby 2.4.1p111 (2017-03-22 revision 58053) [x86_64-darwin16]\n",
    "Krishna's FunPrompt $\n",
    "```"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "```\n",
    "Krishna's FunPrompt $ whatis gem\n",
    "gem(1)                   - RubyGems program\n",
    "Krishna's FunPrompt $ \n",
    "```"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "<a id='javascript_kernel'></a>\n",
    "## Installing Javascript Kernel\n",
    "\n",
    "Following instructions in https://github.com/n-riesco/ijavascript installed [node.js](https://nodejs.org/en/) downloading [node-v6.11.1.pkg](https://nodejs.org/dist/v6.11.1/node-v6.11.1.pkg). \n",
    "\n",
    "```\n",
    "Krishna's FunPrompt $ ruby -e \"$(curl -fsSL https://raw.githubusercontent.com/Homebrew/install/master/install)\"\n",
    "==> This script will install:\n",
    "/usr/local/bin/brew\n",
    "/usr/local/share/doc/homebrew\n",
    "/usr/local/share/man/man1/brew.1\n",
    "/usr/local/share/zsh/site-functions/_brew\n",
    "/usr/local/etc/bash_completion.d/brew\n",
    "/usr/local/Homebrew\n",
    "\n",
    "Press RETURN to continue or any other key to abort\n",
    "==> /usr/bin/sudo /bin/mkdir -p /Library/Caches/Homebrew\n",
    "Password:\n",
    "==> /usr/bin/sudo /bin/chmod g+rwx /Library/Caches/Homebrew\n",
    "==> /usr/bin/sudo /usr/sbin/chown kpadhikari /Library/Caches/Homebrew\n",
    "==> Downloading and installing Homebrew...\n",
    "remote: Total 0 (delta 0), reused 0 (delta 0), pack-reused 0\n",
    "HEAD is now at ac2cbd21 Merge pull request #2957 from GauthamGoli/testbot-newformula-stylechecks-fix\n",
    "==> Cleaning up /Library/Caches/Homebrew...\n",
    "==> Migrating /Library/Caches/Homebrew to /Users/kpadhikari/Library/Caches/Homebrew...\n",
    "==> Deleting /Library/Caches/Homebrew...\n",
    "Already up-to-date.\n",
    "==> Installation successful!\n",
    "\n",
    "==> Homebrew has enabled anonymous aggregate user behaviour analytics.\n",
    "Read the analytics documentation (and how to opt-out) here:\n",
    "  http://docs.brew.sh/Analytics.html\n",
    "\n",
    "==> Next steps:\n",
    "- Run `brew help` to get started\n",
    "- Further documentation: \n",
    "    http://docs.brew.sh\n",
    "Krishna's FunPrompt $ \n",
    "```"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "```\n",
    "Krishna's FunPrompt $ brew install pkg-config node zeromq\n",
    "Warning: pkg-config 0.29.2 is already installed\n",
    "Warning: node 8.2.1 is already installed\n",
    "Warning: zeromq 4.2.2 is already installed\n",
    "Krishna's FunPrompt $\n",
    "Krishna's FunPrompt $ sudo easy_install pip\n",
    "Password:\n",
    "Sorry, try again.\n",
    "Password:\n",
    "Searching for pip\n",
    "Best match: pip 9.0.1\n",
    "Adding pip 9.0.1 to easy-install.pth file\n",
    "Installing pip script to /Users/kpadhikari/anaconda/bin\n",
    "Installing pip3 script to /Users/kpadhikari/anaconda/bin\n",
    "Installing pip3.6 script to /Users/kpadhikari/anaconda/bin\n",
    "\n",
    "Using /Users/kpadhikari/anaconda/lib/python3.6/site-packages\n",
    "Processing dependencies for pip\n",
    "Finished processing dependencies for pip\n",
    "Krishna's FunPrompt $\n",
    "```"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "```\n",
    "Krishna's FunPrompt $ sudo pip install --upgrade pyzmq jupyter\n",
    "The directory '/Users/kpadhikari/Library/Caches/pip/http' or its parent directory is not owned by the current user and the cache has been disabled. Please check the permissions and owner of that directory. If executing pip with sudo, you may want sudo's -H flag.\n",
    "The directory '/Users/kpadhikari/Library/Caches/pip' or its parent directory is not owned by the current user and caching wheels has been disabled. check the permissions and owner of that directory. If executing pip with sudo, you may want sudo's -H flag.\n",
    "Requirement already up-to-date: pyzmq in ./anaconda/lib/python3.6/site-packages\n",
    "Requirement already up-to-date: jupyter in ./anaconda/lib/python3.6/site-packages\n",
    "Krishna's FunPrompt $\n",
    "```"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "```\n",
    "Krishna's FunPrompt $ which npm\n",
    "/usr/local/bin/npm\n",
    "Krishna's FunPrompt $ \n",
    "```"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "```\n",
    "Krishna's FunPrompt $ sudo npm install -g ijavascript\n",
    "/usr/local/bin/ijsconsole -> /usr/local/lib/node_modules/ijavascript/bin/ijsconsole.js\n",
    "/usr/local/bin/ijs -> /usr/local/lib/node_modules/ijavascript/bin/ijavascript.js\n",
    "/usr/local/bin/ijskernel -> /usr/local/lib/node_modules/ijavascript/lib/kernel.js\n",
    "/usr/local/bin/ijsinstall -> /usr/local/lib/node_modules/ijavascript/bin/ijsinstall.js\n",
    "/usr/local/bin/ijsnotebook -> /usr/local/lib/node_modules/ijavascript/bin/ijsnotebook.js\n",
    "\n",
    "> zeromq@4.5.0 install /usr/local/lib/node_modules/ijavascript/node_modules/zeromq\n",
    "> node scripts/prebuild-install.js || (npm run build:libzmq && node-gyp rebuild)\n",
    "\n",
    "\n",
    "prebuild-install info begin Prebuild-install version 2.2.1\n",
    "prebuild-install info looking for local prebuild @ prebuilds/zeromq-v4.5.0-node-v48-darwin-x64.tar.gz\n",
    "prebuild-install WARN install EACCES: permission denied, access '/Users/kpadhikari/.npm'\n",
    "\n",
    "\n",
    "> zeromq@4.5.0 build:libzmq /usr/local/lib/node_modules/ijavascript/node_modules/zeromq\n",
    "> node scripts/preinstall.js\n",
    "\n",
    "Building libzmq for darwin\n",
    "checking for a BSD-compatible install... /usr/bin/install -c\n",
    "checking whether build environment is sane... yes\n",
    "checking for a thread-safe mkdir -p... config/install-sh -c -d\n",
    "checking for gawk... gawk\n",
    "checking whether make sets $(MAKE)... yes\n",
    "checking whether make supports nested variables... yes\n",
    "checking whether UID '4294967294' is supported by ustar format... no\n",
    "checking whether GID '20' is supported by ustar format... yes\n",
    "checking how to create a ustar tar archive... none\n",
    "checking whether make supports nested variables... (cached) yes\n",
    "checking for gcc... gcc\n",
    "checking whether the C compiler works... yes\n",
    "checking for C compiler default output file name... a.out\n",
    "checking for suffix of executables... \n",
    "checking whether we are cross compiling... no\n",
    "checking for suffix of object files... o\n",
    "checking whether we are using the GNU C compiler... yes\n",
    "checking whether gcc accepts -g... yes\n",
    "checking for gcc option to accept ISO C89... none needed\n",
    "checking whether gcc understands -c and -o together... yes\n",
    "checking for style of include used by make... GNU\n",
    "checking dependency style of gcc... gcc3\n",
    "checking whether C compiler accepts -std=gnu11... yes\n",
    "checking for g++... g++\n",
    "checking whether we are using the GNU C++ compiler... yes\n",
    "checking whether g++ accepts -g... yes\n",
    "checking dependency style of g++... gcc3\n",
    "checking whether g++ supports C++11 features by default... no\n",
    "checking whether g++ supports C++11 features with -std=gnu++11... yes\n",
    "checking for a sed that does not truncate output... /usr/bin/sed\n",
    "checking whether to build with code coverage support... no\n",
    "checking for a sed that does not truncate output... (cached) /usr/bin/sed\n",
    "checking for gawk... (cached) gawk\n",
    "checking for pkg-config... /opt/local/bin/pkg-config\n",
    "checking pkg-config is at least version 0.9.0... yes\n",
    "checking for xmlto... /usr/local/bin/xmlto\n",
    "checking for asciidoc... /usr/local/bin/asciidoc\n",
    "checking build system type... x86_64-apple-darwin16.6.0\n",
    "checking host system type... x86_64-apple-darwin16.6.0\n",
    "checking how to print strings... printf\n",
    "checking for a sed that does not truncate output... (cached) /usr/bin/sed\n",
    "checking for grep that handles long lines and -e... /usr/bin/grep\n",
    "checking for egrep... /usr/bin/grep -E\n",
    "checking for fgrep... /usr/bin/grep -F\n",
    "checking for ld used by gcc... /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld\n",
    "checking if the linker (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld) is GNU ld... no\n",
    "checking for BSD- or MS-compatible name lister (nm)... /opt/local/bin/nm -B\n",
    "checking the name lister (/opt/local/bin/nm -B) interface... BSD nm\n",
    "checking whether ln -s works... yes\n",
    "checking the maximum length of command line arguments... 196608\n",
    "checking whether the shell understands some XSI constructs... yes\n",
    "checking whether the shell understands \"+=\"... yes\n",
    "checking how to convert x86_64-apple-darwin16.6.0 file names to x86_64-apple-darwin16.6.0 format... func_convert_file_noop\n",
    "checking how to convert x86_64-apple-darwin16.6.0 file names to toolchain format... func_convert_file_noop\n",
    "checking for /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld option to reload object files... -r\n",
    "checking for objdump... objdump\n",
    "checking how to recognize dependent libraries... pass_all\n",
    "checking for dlltool... dlltool\n",
    "checking how to associate runtime and link libraries... printf %s\\n\n",
    "checking for ar... ar\n",
    "checking for archiver @FILE support... no\n",
    "checking for strip... strip\n",
    "checking for ranlib... ranlib\n",
    "checking command to parse /opt/local/bin/nm -B output from gcc object... ok\n",
    "checking for sysroot... no\n",
    "checking for mt... no\n",
    "checking if : is a manifest tool... no\n",
    "checking for dsymutil... dsymutil\n",
    "checking for nmedit... nmedit\n",
    "checking for lipo... lipo\n",
    "checking for otool... otool\n",
    "checking for otool64... no\n",
    "checking for -single_module linker flag... yes\n",
    "checking for -exported_symbols_list linker flag... yes\n",
    "checking for -force_load linker flag... yes\n",
    "checking how to run the C preprocessor... gcc -E\n",
    "checking for ANSI C header files... yes\n",
    "checking for sys/types.h... yes\n",
    "checking for sys/stat.h... yes\n",
    "checking for stdlib.h... yes\n",
    "checking for string.h... yes\n",
    "checking for memory.h... yes\n",
    "checking for strings.h... yes\n",
    "checking for inttypes.h... yes\n",
    "checking for stdint.h... yes\n",
    "checking for unistd.h... yes\n",
    "checking for dlfcn.h... yes\n",
    "checking for objdir... .libs\n",
    "checking if gcc supports -fno-rtti -fno-exceptions... yes\n",
    "checking for gcc option to produce PIC... -fno-common -DPIC\n",
    "checking if gcc PIC flag -fno-common -DPIC works... yes\n",
    "checking if gcc static flag -static works... no\n",
    "checking if gcc supports -c -o file.o... yes\n",
    "checking if gcc supports -c -o file.o... (cached) yes\n",
    "checking whether the gcc linker (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld) supports shared libraries... yes\n",
    "checking dynamic linker characteristics... darwin16.6.0 dyld\n",
    "checking how to hardcode library paths into programs... immediate\n",
    "checking whether stripping libraries is possible... yes\n",
    "checking if libtool supports shared libraries... yes\n",
    "checking whether to build shared libraries... no\n",
    "checking whether to build static libraries... yes\n",
    "checking how to run the C++ preprocessor... g++ -std=gnu++11 -E\n",
    "checking for ld used by g++ -std=gnu++11... /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld\n",
    "checking if the linker (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld) is GNU ld... no\n",
    "checking whether the g++ -std=gnu++11 linker (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld) supports shared libraries... yes\n",
    "checking for g++ -std=gnu++11 option to produce PIC... -fno-common -DPIC\n",
    "checking if g++ -std=gnu++11 PIC flag -fno-common -DPIC works... yes\n",
    "checking if g++ -std=gnu++11 static flag -static works... no\n",
    "checking if g++ -std=gnu++11 supports -c -o file.o... yes\n",
    "checking if g++ -std=gnu++11 supports -c -o file.o... (cached) yes\n",
    "checking whether the g++ -std=gnu++11 linker (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld) supports shared libraries... yes\n",
    "checking dynamic linker characteristics... darwin16.6.0 dyld\n",
    "checking how to hardcode library paths into programs... immediate\n",
    "checking for valgrind... no\n",
    "checking whether the C compiler works... yes\n",
    "checking whether we are using Intel C compiler... no\n",
    "checking whether we are using Sun Studio C compiler... no\n",
    "checking whether we are using clang C compiler... yes\n",
    "checking whether we are using gcc >= 4 C compiler... yes\n",
    "checking whether the C++ compiler works... yes\n",
    "checking whether we are using Intel C++ compiler... no\n",
    "checking whether we are using Sun Studio C++ compiler... no\n",
    "checking whether we are using clang C++ compiler... yes\n",
    "checking whether we are using gcc >= 4 C++ compiler... yes\n",
    "checking whether to enable debugging information... no\n",
    "checking whether to enable code coverage... no\n",
    "checking if TIPC is available and supports nonblocking connect... no\n",
    "checking whether C++ compiler supports -Wno-uninitialized... yes\n",
    "checking for pthread_create in -lpthread... yes\n",
    "checking for clock_gettime in -lrt... no\n",
    "checking whether C++ compiler supports -fvisibility=hidden... yes\n",
    "checking whether C++ compiler supports dso visibility... yes\n",
    "checking whether to build documentation... no\n",
    "checking whether to install manpages... no\n",
    "configure: Choosing polling system from 'kqueue epoll devpoll pollset poll select'...\n",
    "configure: Using 'kqueue' polling system\n",
    "checking for ANSI C header files... (cached) yes\n",
    "checking errno.h usability... yes\n",
    "checking errno.h presence... yes\n",
    "checking for errno.h... yes\n",
    "checking time.h usability... yes\n",
    "checking time.h presence... yes\n",
    "checking for time.h... yes\n",
    "checking for unistd.h... (cached) yes\n",
    "checking limits.h usability... yes\n",
    "checking limits.h presence... yes\n",
    "checking for limits.h... yes\n",
    "checking stddef.h usability... yes\n",
    "checking stddef.h presence... yes\n",
    "checking for stddef.h... yes\n",
    "checking for stdlib.h... (cached) yes\n",
    "checking for string.h... (cached) yes\n",
    "checking arpa/inet.h usability... yes\n",
    "checking arpa/inet.h presence... yes\n",
    "checking for arpa/inet.h... yes\n",
    "checking netinet/tcp.h usability... yes\n",
    "checking netinet/tcp.h presence... yes\n",
    "checking for netinet/tcp.h... yes\n",
    "checking netinet/in.h usability... yes\n",
    "checking netinet/in.h presence... yes\n",
    "checking for netinet/in.h... yes\n",
    "checking sys/socket.h usability... yes\n",
    "checking sys/socket.h presence... yes\n",
    "checking for sys/socket.h... yes\n",
    "checking sys/time.h usability... yes\n",
    "checking sys/time.h presence... yes\n",
    "checking for sys/time.h... yes\n",
    "checking ifaddrs.h usability... yes\n",
    "checking ifaddrs.h presence... yes\n",
    "checking for ifaddrs.h... yes\n",
    "checking sys/uio.h usability... yes\n",
    "checking sys/uio.h presence... yes\n",
    "checking for sys/uio.h... yes\n",
    "checking sys/eventfd.h usability... no\n",
    "checking sys/eventfd.h presence... no\n",
    "checking for sys/eventfd.h... no\n",
    "checking whether SO_PEERCRED is declared... no\n",
    "checking whether LOCAL_PEERCRED is declared... no\n",
    "checking for stdbool.h that conforms to C99... yes\n",
    "checking for _Bool... no\n",
    "checking for an ANSI C-conforming const... yes\n",
    "checking for inline... inline\n",
    "checking for size_t... yes\n",
    "checking for ssize_t... yes\n",
    "checking whether time.h and sys/time.h may both be included... yes\n",
    "checking for uint32_t... yes\n",
    "checking for working volatile... yes\n",
    "configure: Using tweetnacl for CURVE security\n",
    "checking \"with_norm_ext = no\"... no\n",
    "checking how to enable additional warnings for C++ compiler... -Wall\n",
    "checking whether compiler supports __atomic_Xxx intrinsics... yes\n",
    "checking return type of signal handlers... void\n",
    "checking for perror... yes\n",
    "checking for gettimeofday... yes\n",
    "checking for clock_gettime... yes\n",
    "checking for memset... yes\n",
    "checking for socket... yes\n",
    "checking for getifaddrs... yes\n",
    "checking for freeifaddrs... yes\n",
    "checking for fork... yes\n",
    "checking for posix_memalign... yes\n",
    "checking for mkdtemp... yes\n",
    "checking alloca.h usability... yes\n",
    "checking alloca.h presence... yes\n",
    "checking for alloca.h... yes\n",
    "checking whether SOCK_CLOEXEC is supported... no\n",
    "checking whether SO_KEEPALIVE is supported... yes\n",
    "checking whether TCP_KEEPCNT is supported... yes\n",
    "checking whether TCP_KEEPIDLE is supported... no\n",
    "checking whether TCP_KEEPINTVL is supported... yes\n",
    "checking whether TCP_KEEPALIVE is supported... yes\n",
    "checking for ./.git... no\n",
    "configure: Building stable and legacy API (no draft API)\n",
    "checking for LIBUNWIND... no\n",
    "configure: WARNING: Cannot find libunwind\n",
    "checking that generated files are newer than configure... done\n",
    "configure: creating ./config.status\n",
    "config.status: creating Makefile\n",
    "dyld: Library not loaded: /opt/local/lib/libreadline.6.dylib\n",
    "  Referenced from: /opt/local/bin/gawk\n",
    "  Reason: image not found\n",
    "sed: stdout: Broken pipe\n",
    "./config.status: line 1590: 83450 Done(1)                 eval sed \\\"\\$ac_sed_extra\\\" \"$ac_file_inputs\"\n",
    "     83451 Abort trap: 6           | $AWK -f \"$ac_tmp/subs.awk\" > $ac_tmp/out\n",
    "config.status: error: could not create Makefile\n",
    "child process exited with code 1\n",
    "gyp WARN EACCES user \"root\" does not have permission to access the dev dir \"/Users/kpadhikari/.node-gyp/6.11.1\"\n",
    "gyp WARN EACCES attempting to reinstall using temporary dev dir \"/usr/local/lib/node_modules/ijavascript/node_modules/zeromq/.node-gyp\"\n",
    "  CXX(target) Release/obj.target/zmq/binding.o\n",
    "  SOLINK_MODULE(target) Release/zmq.node\n",
    "clang: error: no such file or directory: './Release/../../zmq/lib/libzmq.a'\n",
    "make: *** [Release/zmq.node] Error 1\n",
    "gyp ERR! build error \n",
    "gyp ERR! stack Error: `make` failed with exit code: 2\n",
    "gyp ERR! stack     at ChildProcess.onExit (/usr/local/lib/node_modules/npm/node_modules/node-gyp/lib/build.js:276:23)\n",
    "gyp ERR! stack     at emitTwo (events.js:106:13)\n",
    "gyp ERR! stack     at ChildProcess.emit (events.js:191:7)\n",
    "gyp ERR! stack     at Process.ChildProcess._handle.onexit (internal/child_process.js:215:12)\n",
    "gyp ERR! System Darwin 16.6.0\n",
    "gyp ERR! command \"/usr/local/bin/node\" \"/usr/local/lib/node_modules/npm/node_modules/node-gyp/bin/node-gyp.js\" \"rebuild\"\n",
    "gyp ERR! cwd /usr/local/lib/node_modules/ijavascript/node_modules/zeromq\n",
    "gyp ERR! node -v v6.11.1\n",
    "gyp ERR! node-gyp -v v3.4.0\n",
    "gyp ERR! not ok \n",
    "/usr/local/lib\n",
    "└── (empty)\n",
    "\n",
    "npm ERR! Darwin 16.6.0\n",
    "npm ERR! argv \"/usr/local/bin/node\" \"/usr/local/bin/npm\" \"install\" \"-g\" \"ijavascript\"\n",
    "npm ERR! node v6.11.1\n",
    "npm ERR! npm  v3.10.10\n",
    "npm ERR! code ELIFECYCLE\n",
    "\n",
    "npm ERR! zeromq@4.5.0 install: `node scripts/prebuild-install.js || (npm run build:libzmq && node-gyp rebuild)`\n",
    "npm ERR! Exit status 1\n",
    "npm ERR! \n",
    "npm ERR! Failed at the zeromq@4.5.0 install script 'node scripts/prebuild-install.js || (npm run build:libzmq && node-gyp rebuild)'.\n",
    "npm ERR! Make sure you have the latest version of node.js and npm installed.\n",
    "npm ERR! If you do, this is most likely a problem with the zeromq package,\n",
    "npm ERR! not with npm itself.\n",
    "npm ERR! Tell the author that this fails on your system:\n",
    "npm ERR!     node scripts/prebuild-install.js || (npm run build:libzmq && node-gyp rebuild)\n",
    "npm ERR! You can get information on how to open an issue for this project with:\n",
    "npm ERR!     npm bugs zeromq\n",
    "npm ERR! Or if that isn't available, you can get their info via:\n",
    "npm ERR!     npm owner ls zeromq\n",
    "npm ERR! There is likely additional logging output above.\n",
    "\n",
    "npm ERR! Please include the following file with any support request:\n",
    "npm ERR!     /Users/kpadhikari/npm-debug.log\n",
    "npm ERR! code 1\n",
    "Krishna's FunPrompt $\n",
    "```"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "<a id='scilab_kernel'></a>\n",
    "## Installing Scilab Kernel\n",
    "Reference: https://github.com/calysto/scilab_kernel\n",
    "\n",
    "First of all,  I installed (7/28/17) Scilab 6.0.0 (Scilab is one of the open-source alternatives to MATLAB, another popular alternative is [GNU Octave](https://www.gnu.org/software/octave/)) by dowloading the [scilab-6.0.0-x86_64.dmg](http://www.scilab.org/download/6.0.0/scilab-6.0.0-x86_64.dmg) file (222 MB), opening it and dragging Scilab icon to the Applications folder (from the new window that dmg file opened). Now it shows up in the Launcher. (References: http://www.scilab.org/)\n",
    "\n",
    "Then, I used the following commands to install it after Scilab was installed:\n",
    "```\n",
    "pip install scilab_kernel\n",
    "python -m scilab_kernel.install\n",
    "```"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "<a id='tcl_kernel'></a>\n",
    "## Installing A Jupyter [Kernel for Tcl](https://github.com/rpep/tcl_kernel)\n",
    "This uses the version of Tcl that comes with Python, through Tkinter, so you do not need to install anything else.\n",
    "\n",
    "Install via:\n",
    "* pip3 install tcl_kernel\n",
    "* python3 -m tcl_kernel.install\n",
    "\n",
    "```\n",
    "Krishna's FunPrompt $ which tcl\n",
    "Krishna's FunPrompt $ pip3 install tcl_kernel\n",
    "Collecting tcl_kernel\n",
    "  Downloading tcl_kernel-0.0.4-py2.py3-none-any.whl\n",
    "Requirement already satisfied: pexpect>=3.3 in ./anaconda/lib/python3.6/site-packages (from tcl_kernel)\n",
    "Installing collected packages: tcl-kernel\n",
    "Successfully installed tcl-kernel-0.0.4\n",
    "Krishna's FunPrompt $ python3 -m tcl_kernel.install\n",
    "Installing IPython kernel spec\n",
    "Krishna's FunPrompt $ \n",
    "```"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "<a id='gnuplot_kernel'></a>\n",
    "## Installing A Jupyter [Kernel for Gnuplot](https://github.com/has2k1/gnuplot_kernel)\n",
    "\n",
    "gnuplot_kernel has been developed for use specifically with Jupyter Notebook. It can also be loaded as an IPython extension allowing for gnuplot code in the same notebook as python code.\n",
    "\n",
    "```\n",
    "Krishna's FunPrompt $ pip install gnuplot_kernel\n",
    "Collecting gnuplot_kernel\n",
    "  Downloading gnuplot_kernel-0.2.3-py2.py3-none-any.whl\n",
    "Requirement already satisfied: notebook>=4.0 in ./anaconda/lib/python3.6/site-packages (from gnuplot_kernel)\n",
    "Requirement already satisfied: metakernel>=0.17.4 in ./anaconda/lib/python3.6/site-packages (from gnuplot_kernel)\n",
    "Requirement already satisfied: ipykernel in ./anaconda/lib/python3.6/site-packages (from metakernel>=0.17.4->gnuplot_kernel)\n",
    "Requirement already satisfied: pexpect>=4.2 in ./anaconda/lib/python3.6/site-packages (from metakernel>=0.17.4->gnuplot_kernel)\n",
    "Installing collected packages: gnuplot-kernel\n",
    "Successfully installed gnuplot-kernel-0.2.3\n",
    "Krishna's FunPrompt $ pip install --upgrade gnuplot_kernel\n",
    "Requirement already up-to-date: gnuplot_kernel in ./anaconda/lib/python3.6/site-packages\n",
    "Requirement already up-to-date: metakernel>=0.17.4 in ./anaconda/lib/python3.6/site-packages (from gnuplot_kernel)\n",
    "Requirement already up-to-date: notebook>=4.0 in ./anaconda/lib/python3.6/site-packages (from gnuplot_kernel)\n",
    "Requirement already up-to-date: pexpect>=4.2 in ./anaconda/lib/python3.6/site-packages (from metakernel>=0.17.4->gnuplot_kernel)\n",
    "Requirement already up-to-date: ipykernel in ./anaconda/lib/python3.6/site-packages (from metakernel>=0.17.4->gnuplot_kernel)\n",
    "Krishna's FunPrompt $ \n",
    "```"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "<a id='octave_kernel'></a>\n",
    "## Installing A Jupyter [Kernel for Octave](https://github.com/calysto/octave_kernel)\n",
    "\n",
    "Prerequisites: Install Jupyter Notebook, and Octave. It is recommended that you also install gnuplot support in Octave for inline plotting.\n",
    "\n",
    "```\n",
    "Krishna's FunPrompt $ pip install --upgrade gnuplot_kernel\n",
    "Requirement already up-to-date: gnuplot_kernel in ./anaconda/lib/python3.6/site-packages\n",
    "Requirement already up-to-date: metakernel>=0.17.4 in ./anaconda/lib/python3.6/site-packages (from gnuplot_kernel)\n",
    "Requirement already up-to-date: notebook>=4.0 in ./anaconda/lib/python3.6/site-packages (from gnuplot_kernel)\n",
    "Requirement already up-to-date: pexpect>=4.2 in ./anaconda/lib/python3.6/site-packages (from metakernel>=0.17.4->gnuplot_kernel)\n",
    "Requirement already up-to-date: ipykernel in ./anaconda/lib/python3.6/site-packages (from metakernel>=0.17.4->gnuplot_kernel)\n",
    "Krishna's FunPrompt $ pip install octave_kernel\n",
    "Collecting octave_kernel\n",
    "  Downloading octave_kernel-0.26.2-py2.py3-none-any.whl\n",
    "Requirement already satisfied: ipykernel in ./anaconda/lib/python3.6/site-packages (from octave_kernel)\n",
    "Requirement already satisfied: metakernel>=0.18.0 in ./anaconda/lib/python3.6/site-packages (from octave_kernel)\n",
    "Requirement already satisfied: jupyter-client>=4.3.0 in ./anaconda/lib/python3.6/site-packages (from octave_kernel)\n",
    "Requirement already satisfied: pexpect>=4.2 in ./anaconda/lib/python3.6/site-packages (from metakernel>=0.18.0->octave_kernel)\n",
    "Installing collected packages: octave-kernel\n",
    "Successfully installed octave-kernel-0.26.2\n",
    "Krishna's FunPrompt $ python -m octave_kernel.install\n",
    "Krishna's FunPrompt \n",
    "```\n",
    "\n",
    "**Before the kernel installation** I had done the following to try to get **[GNU Octave](https://www.gnu.org/software/octave)** installed in my machine.\n",
    "\n",
    "(References https://www.gnu.org/software/octave/#install, http://wiki.octave.org/Octave_for_macOS) \n",
    "\n",
    "* Unsuccessfully tried Macports to do the basic installation. I used “sudo port install octave” command to do that. (Disk size changed from 106.81 GB to 105.94 GB but the installation failed - see below for some part of the installation std outuput) \n",
    "* Then tried ‘fink’ method too, but it didn’t work either.\n",
    "* Finally, it worked when I tried with homebrew (Starting HD size 104.91 GB) using instructions from http://wiki.octave.org/Octave_for_macOS#Homebrew. I think it was successful (size down to 104.04 GB). Otherwise, the notebook kernell installation alone wouldn't have worked.\n"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 1,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/plain": [
       "5"
      ]
     },
     "execution_count": 1,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "2+3"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {
    "collapsed": true
   },
   "source": [
    "<a id='fortran_kernel'></a>\n",
    "## Installing A Jupyter [Kernel for Fortran](https://github.com/ZedThree/jupyter-fortran-kernel)\n",
    "First of all, I was led to the kernel site (checkout above link) from https://github.com/sourceryinstitute/jupyter-CAF-kernel. Then I tried the following (as suggested by that site):\n",
    "```\n",
    "Krishna's FunPrompt $ which gfortran\n",
    "/usr/local/bin/gfortran\n",
    "Krishna's FunPrompt $ cd\n",
    "Krishna's FunPrompt $ cd KpInstalls/\n",
    "Krishna's FunPrompt $ pwd\n",
    "/Users/kpadhikari/KpInstalls\n",
    "Krishna's FunPrompt $ ls\n",
    "Cling                         JupyterKernels                ROOT                          apache-maven-3.5.0-src.tar.gz\n",
    "Geant4                        Jython2.7.0                   apache-maven-3.5.0\n",
    "IJython                       Qt                            apache-maven-3.5.0-bin.tar.gz\n",
    "Krishna's FunPrompt $ git clone git@github.com:ZedThree/jupyter-fortran-kernel.git\n",
    "Cloning into 'jupyter-fortran-kernel'...\n",
    "remote: Counting objects: 172, done.\n",
    "remote: Total 172 (delta 0), reused 0 (delta 0), pack-reused 172\n",
    "Receiving objects: 100% (172/172), 304.30 KiB | 0 bytes/s, done.\n",
    "Resolving deltas: 100% (88/88), done.\n",
    "Krishna's FunPrompt $ du -sh jupyter-fortran-kernel/\n",
    "448K\tjupyter-fortran-kernel/\n",
    "Krishna's FunPrompt $ which pip\n",
    "Krishna's FunPrompt $ which pip3\n",
    "/usr/local/bin/pip3\n",
    "Krishna's FunPrompt $ pip3 install -e --user jupyter-fortran-kernel\n",
    "--user should either be a path to a local project or a VCS url beginning with svn+, git+, hg+, or bzr+\n",
    "Krishna's FunPrompt $\n",
    "```"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "https://stackoverflow.com/questions/42988977/what-is-the-purpose-pip-install-user\n",
    "\n",
    "pip defaults to installing Python packages to a system directory (such as /usr/local/lib/python3.4). This requires root access.\n",
    "\n",
    "--user makes pip install packages in your home directory instead, which doesn't require any special privileges.\n"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "```\n",
    "Krishna's FunPrompt $ pip3 install -e  jupyter-fortran-kernel\n",
    "Obtaining file:///Users/kpadhikari/KpInstalls/jupyter-fortran-kernel\n",
    "Installing collected packages: jupyter-fortran-kernel\n",
    "  Running setup.py develop for jupyter-fortran-kernel\n",
    "Successfully installed jupyter-fortran-kernel\n",
    "Krishna's FunPrompt $ which jupyter-fortran-kernel\n",
    "Krishna's FunPrompt $ cd jupyter-fortran-kernel/\n",
    "Krishna's FunPrompt $ ls\n",
    "LICENSE.txt                     example-notebook.ipynb          jupyter_fortran_kernel.egg-info\n",
    "MANIFEST.in                     fortran_spec                    setup.cfg\n",
    "README.md                       jupyter_fortran_kernel          setup.py\n",
    "Krishna's FunPrompt $ ll\n",
    "total 48\n",
    "-rw-r--r--  1 kpadhikari  staff   1.1K Aug  2 21:35 LICENSE.txt\n",
    "-rw-r--r--  1 kpadhikari  staff    20B Aug  2 21:35 MANIFEST.in\n",
    "-rw-r--r--  1 kpadhikari  staff   747B Aug  2 21:35 README.md\n",
    "-rw-r--r--  1 kpadhikari  staff   3.6K Aug  2 21:35 example-notebook.ipynb\n",
    "drwxr-xr-x  3 kpadhikari  staff   102B Aug  2 21:35 fortran_spec\n",
    "drwxr-xr-x  5 kpadhikari  staff   170B Aug  2 21:35 jupyter_fortran_kernel\n",
    "drwxr-xr-x  6 kpadhikari  staff   204B Aug  2 21:41 jupyter_fortran_kernel.egg-info\n",
    "-rw-r--r--  1 kpadhikari  staff    67B Aug  2 21:35 setup.cfg\n",
    "-rw-r--r--  1 kpadhikari  staff   1.0K Aug  2 21:35 setup.py\n",
    "Krishna's FunPrompt $ du -sh .git\n",
    "404K\t.git\n",
    "Krishna's FunPrompt $ du -sh .git\n",
    "404K\t.git\n",
    "Krishna's FunPrompt $ du -sh\n",
    "464K\t.\n",
    "Krishna's FunPrompt $ rm -f .git\n",
    "rm: .git: is a directory\n",
    "Krishna's FunPrompt $ rm -fr .git\n",
    "Krishna's FunPrompt $ ls\n",
    "LICENSE.txt                     example-notebook.ipynb          jupyter_fortran_kernel.egg-info\n",
    "MANIFEST.in                     fortran_spec                    setup.cfg\n",
    "README.md                       jupyter_fortran_kernel          setup.py\n",
    "Krishna's FunPrompt $ du -sh\n",
    " 60K\t.\n",
    "Krishna's FunPrompt $ jupyter-kernelspec install fortran_spec/\n",
    "[InstallKernelSpec] Installed kernelspec fortran_spec in /usr/local/share/jupyter/kernels/fortran_spec\n",
    "Krishna's FunPrompt $ which jupyter-fortran-kernel\n",
    "Krishna's FunPrompt $ du -sh\n",
    " 60K\t.\n",
    "Krishna's FunPrompt $\n",
    "```"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {
    "collapsed": true
   },
   "outputs": [],
   "source": []
  }
 ],
 "metadata": {
  "kernelspec": {
   "display_name": "Python 2",
   "language": "python",
   "name": "python2"
  },
  "language_info": {
   "codemirror_mode": {
    "name": "ipython",
    "version": 2
   },
   "file_extension": ".py",
   "mimetype": "text/x-python",
   "name": "python",
   "nbconvert_exporter": "python",
   "pygments_lexer": "ipython2",
   "version": "2.7.13"
  }
 },
 "nbformat": 4,
 "nbformat_minor": 2
}