From 240521ee6acca8dbadbc5ff52143c2351a595b10 Mon Sep 17 00:00:00 2001 From: GitHub Action Date: Tue, 11 Feb 2025 21:06:29 +0000 Subject: [PATCH] =?UTF-8?q?=F0=9F=9A=80=20Automatically=20rebuilt=20derive?= =?UTF-8?q?d=20files?= MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit --- reports/metadata-grid.csv | 85 +++++++++++++++++---------------- reports/metadata-violations.tsv | 40 ---------------- 2 files changed, 44 insertions(+), 81 deletions(-) diff --git a/reports/metadata-grid.csv b/reports/metadata-grid.csv index af0e503..b33cd19 100644 --- a/reports/metadata-grid.csv +++ b/reports/metadata-grid.csv @@ -1,46 +1,49 @@ -Ontology,Activity Status,Validation Status +Resource,Activity Status,Validation Status +automat,active,PASS +biolink,active,PASS +cam-kp,active,PASS +cfde,active,PASS chr,active,PASS +clinical-data-kp,active,PASS +connections-hypothesis-kp,active,PASS +drkg,active,PASS +drugbank,active,PASS +eco-kg,active,PASS ecosim,active,PASS +genetics-kp,active,PASS goldterms,active,PASS +hgnc,active,PASS +hra-kg,active,PASS +icees-kg,active,PASS +interpro,active,PASS +kg-covid-19,active,PASS +kg-enp,active,PASS +kg-idg,active,PASS +kg-microbe,active,PASS +kg-monarch,active,PASS +kgcl,active,PASS +mixs,active,PASS +molecular-data-kp,active,PASS +multiomics-kp,active,PASS neo,active,PASS +ontology-kp,active,PASS orcid,active,PASS -automat,active,INFO -biolink,active,INFO -cam-kp,active,INFO -cfde,active,INFO -clinical-data-kp,active,INFO -connections-hypothesis-kp,active,INFO -drkg,active,INFO -drugbank,active,INFO -eco-kg,active,INFO -genetics-kp,active,INFO -hgnc,active,INFO -icees-kg,active,INFO -interpro,active,INFO -kg-covid-19,active,INFO -kg-enp,active,INFO -kg-idg,active,INFO -kg-microbe,active,INFO -kg-monarch,active,INFO -kgcl,active,INFO -mixs,active,INFO -molecular-data-kp,active,INFO -multiomics-kp,active,INFO -ontology-kp,active,INFO -pheknowlator,active,INFO -phenio,active,INFO -primekg,active,INFO -reacto,active,INFO -reactome,active,INFO -rhea,active,INFO -rna-kg,active,INFO -rtx-kg2,active,INFO -service-kp,active,INFO -sgd,active,INFO -sldb,active,INFO -spoke,active,INFO -sri-reference-kg,active,INFO -swisslipid,active,INFO -text-mining-kp,active,INFO -ubergraph,active,INFO -uniprot,active,INFO +petagraph,active,PASS +pheknowlator,active,PASS +phenio,active,PASS +primekg,active,PASS +reacto,active,PASS +reactome,active,PASS +rhea,active,PASS +rna-kg,active,PASS +robokop,active,PASS +rtx-kg2,active,PASS +service-kp,active,PASS +sgd,active,PASS +sldb,active,PASS +spoke,active,PASS +sri-reference-kg,active,PASS +swisslipid,active,PASS +text-mining-kp,active,PASS +ubergraph,active,PASS +uniprot,active,PASS diff --git a/reports/metadata-violations.tsv b/reports/metadata-violations.tsv index 88eff1e..707ccb6 100644 --- a/reports/metadata-violations.tsv +++ b/reports/metadata-violations.tsv @@ -1,41 +1 @@ Level Message -INFO AUTOMAT products: 'ubergraph_automat' does not match '^[0-9A-Za-z-_\\/]+\\.(owl|obo|json|omn|ofn|owx|ttl|owl\\.gz)$' -INFO BIOLINK products: 'biolink-model.owl.ttl' does not match '^[0-9A-Za-z-_\\/]+\\.(owl|obo|json|omn|ofn|owx|ttl|owl\\.gz)$' -INFO CAM-KP products: 'products' is a required property -INFO CFDE products: 'products' is a required property -INFO CLINICAL-DATA-KP products: 'products' is a required property -INFO CONNECTIONS-HYPOTHESIS-KP products: 'products' is a required property -INFO DRKG products: 'products' is a required property -INFO DRUGBANK products: 'drugbank.sssom' does not match '^[0-9A-Za-z-_\\/]+\\.(owl|obo|json|omn|ofn|owx|ttl|owl\\.gz)$' -INFO ECO-KG products: 'products' is a required property -INFO GENETICS-KP products: 'products' is a required property -INFO HGNC products: 'hgnc.sssom' does not match '^[0-9A-Za-z-_\\/]+\\.(owl|obo|json|omn|ofn|owx|ttl|owl\\.gz)$' -INFO ICEES-KG products: 'icees_kgx_files' does not match '^[0-9A-Za-z-_\\/]+\\.(owl|obo|json|omn|ofn|owx|ttl|owl\\.gz)$' -INFO INTERPRO products: 'interpro.sssom' does not match '^[0-9A-Za-z-_\\/]+\\.(owl|obo|json|omn|ofn|owx|ttl|owl\\.gz)$' -INFO KG-COVID-19 products: 'products' is a required property -INFO KG-ENP products: 'products' is a required property -INFO KG-IDG products: 'kg-idg.tar.gz' does not match '^[0-9A-Za-z-_\\/]+\\.(owl|obo|json|omn|ofn|owx|ttl|owl\\.gz)$' -INFO KG-MICROBE products: 'kg-microbe.tar.gz' does not match '^[0-9A-Za-z-_\\/]+\\.(owl|obo|json|omn|ofn|owx|ttl|owl\\.gz)$' -INFO KG-MONARCH products: 'kg-monarch.tar.gz' does not match '^[0-9A-Za-z-_\\/]+\\.(owl|obo|json|omn|ofn|owx|ttl|owl\\.gz)$' -INFO KGCL products: None is not of type 'string' -INFO MIXS products: None is not of type 'string' -INFO MOLECULAR-DATA-KP products: 'edges.tsv' does not match '^[0-9A-Za-z-_\\/]+\\.(owl|obo|json|omn|ofn|owx|ttl|owl\\.gz)$' -INFO MULTIOMICS-KP products: 'products' is a required property -INFO ONTOLOGY-KP products: 'products' is a required property -INFO PHEKNOWLATOR products: 'products' is a required property -INFO PHENIO products: 'phenio.kgx' does not match '^[0-9A-Za-z-_\\/]+\\.(owl|obo|json|omn|ofn|owx|ttl|owl\\.gz)$' -INFO PRIMEKG preferredPrefix: 'preferredPrefix' is a required property -INFO REACTO products: None is not of type 'string' -INFO REACTOME products: 'reactome-hs-biopax.db.gz' does not match '^[0-9A-Za-z-_\\/]+\\.(owl|obo|json|omn|ofn|owx|ttl|owl\\.gz)$' -INFO RHEA products: 'rhea.sssom' does not match '^[0-9A-Za-z-_\\/]+\\.(owl|obo|json|omn|ofn|owx|ttl|owl\\.gz)$' -INFO RNA-KG products: 'products' is a required property -INFO RTX-KG2 products: 'products' is a required property -INFO SERVICE-KP products: 'products' is a required property -INFO SGD products: 'sgd.sssom' does not match '^[0-9A-Za-z-_\\/]+\\.(owl|obo|json|omn|ofn|owx|ttl|owl\\.gz)$' -INFO SLDB products: 'products' is a required property -INFO SPOKE products: 'products' is a required property -INFO SRI-REFERENCE-KG products: 'monarch-kg.tar.gz' does not match '^[0-9A-Za-z-_\\/]+\\.(owl|obo|json|omn|ofn|owx|ttl|owl\\.gz)$' -INFO SWISSLIPID products: 'swisslipid.sssom' does not match '^[0-9A-Za-z-_\\/]+\\.(owl|obo|json|omn|ofn|owx|ttl|owl\\.gz)$' -INFO TEXT-MINING-KP products: 'targeted_assertions.tar.gz' does not match '^[0-9A-Za-z-_\\/]+\\.(owl|obo|json|omn|ofn|owx|ttl|owl\\.gz)$' -INFO UBERGRAPH preferredPrefix: 'preferredPrefix' is a required property -INFO UNIPROT products: 'uniprot.sssom' does not match '^[0-9A-Za-z-_\\/]+\\.(owl|obo|json|omn|ofn|owx|ttl|owl\\.gz)$'