CITATION.bib

Before a full article is published, please cite the following when refering to EDAM-bioimaging in a scholarly publication:

    Matúš Kalaš, Laure Plantard, Moritz Alexander Kirschmann, Joakim Lindblad, Anatole Chessel, Nataša Sladoje-Matić, Leandro A. Scholz, Chong Zhang, Fabienne Rössler, Alexandre Dufour, John A. Bogovic, Martin Jones, Josh Moore, Alban Gaignard, Lassi Paavolainen, David Hörl, Ofra Golani, Participants in the NEUBIAS Taggathons, Perrine Paul-Gilloteaux, the EDAM dev team, Kota Miura, Julien Colombelli, and welcoming contributors (2018). EDAM-bioimaging: the ontology of bioimage informatics operations, topics, data, and formats [version 1; not peer reviewed]. F1000Research, 7(ELIXIR): 180. Poster. DOI: 10.7490/f1000research.1115257.1 Open Access

@article{Kalas-etal2018,
  author = {Mat\'{u}\v{s} Kala\v{s} and Laure Plantard and Moritz Alexander Kirschmann and Joakim Lindblad and Anatole Chessel and Nata\v{s}a Sladoje-Mati\'{c} and Leandro A. Scholz and Chong Zhang and Fabienne R\"{o}ssler and Alexandre Dufour and John A. Bogovic and Martin Jones and Josh Moore and Alban Gaignard and Lassi Paavolainen and David H\"{o}rl and Ofra Golani and {Participants in the NEUBIAS Taggathons} and Perrine Paul-Gilloteaux and {the EDAM dev team} and Kota Miura and Julien Colombelli and {welcoming contributors}},
  title = {{EDAM-bioimaging: the ontology of bioimage informatics operations, topics, data, and formats [version 1; not peer reviewed]}},
  journal = {F1000Research},
  year = {2018},
  month = {Feb},
  day = {12},
  volume = {7},
  number = {ELIXIR},
  pages = {180},
  note = {Poster},
  access = {open},
  doi = {10.7490/f1000research.1115257.1},
  url = {https://doi.org/10.7490/f1000research.1115257.1},
  eprint = {https://f1000research.com/posters/7-180}
}




The "mainline" EDAM ontology can be cited by:

    Jon Ison, Matúš Kalaš, Inge Jonassen, Dan Bolser, Mahmut Uludag, Hamish McWilliam, James Malone, Rodrigo Lopez, Steve Pettifer, and Peter Rice (2013). EDAM: an ontology of bioinformatics operations, types of data and identifiers, topics and formats. Bioinformatics, 29(10): 1325-1332. DOI: 10.1093/bioinformatics/btt113 PMID: 23479348 Open Access

@article{Ison-etal2013,
  author = {Ison, Jon and Kala\v{s}, Mat\'{u}\v{s} and Jonassen, Inge and Bolser, Dan and Uludag, Mahmut and McWilliam, Hamish and Malone, James and Lopez, Rodrigo and Pettifer, Steve and Rice, Peter}, 
  title = {{EDAM: An ontology of bioinformatics operations, types of data and identifiers, topics, and formats}},
  journal = {Bioinformatics},
  volume = {29},
  number = {10},
  pages = {1325-1332},
  year = {2013},
  month = {Mar},
  day = {11},
  doi = {10.1093/bioinformatics/btt113},
  access = {open},
  pmid = {23479348},
  pmcid = {PMC3654706},
  URL = {https://doi.org/10.1093/bioinformatics/btt113},
  eprint = {https://academic.oup.com/bioinformatics/article/29/10/1325/255660},
  PDF = {https://academic.oup.com/bioinformatics/article-pdf/29/10/1325/710075/btt113.pdf}
}




EDAM-bioimaging releases are citable with DOIs too, for cases when that is needed. 10.5281/zenodo.1149730 represents all releases and resolves to the DOI of the last stable release. For the DOI of a particular release of EDAM-bioimaging, please see /releases.

@misc{Kalas-etal2016-2018,
  author = {Mat\'{u}\v{s} Kala\v{s} and Contributors from NEUBIAS Taggathons},
  title = {edamontology/edam-bioimaging},
  year = {2016-2018},
  note = {Software (all versions)},
  howpublished = {\url{https://github.com/edamontology/edam-bioimaging}},
  doi = {10.5281/zenodo.1149730},
  access = {open},
  URL = {https://doi.org/10.5281/zenodo.1149730},
  eprint = {https://zenodo.org/record/1149730}
}

@misc{Kalas-etal2018,
  author = {Mat\'{u}\v{s} Kala\v{s} and Contributors from NEUBIAS Taggathons},
  title = {edamontology/edam-bioimaging: alpha03},
  year = {2018},
  month = {Jan},
  day = {16},
  note = {Software version},
  howpublished = {\url{https://github.com/edamontology/edam-bioimaging/releases/tag/alpha03}},
  doi = {10.5281/zenodo.1149731},
  access = {open},
  URL = {https://doi.org/10.5281/zenodo.1149731},
  eprint = {https://zenodo.org/record/1149731}
}