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environment_genot.yml
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name: genot
channels:
- conda-forge
dependencies:
- pip:
- absl-py==1.4.0
- anndata==0.9.2
- appdirs==1.4.4
- array-record==0.4.0
- asttokens==2.2.1
- astunparse==1.6.3
- backcall==0.2.0
- cachetools==5.3.1
- certifi==2023.7.22
- charset-normalizer==3.2.0
- chex==0.1.82
- click==8.1.6
- comm==0.1.4
- contourpy==1.1.0
- cycler==0.11.0
- debugpy==1.6.8
- decorator==5.1.1
- diffrax==0.4.0
- dm-tree==0.1.8
- docker-pycreds==0.4.0
- entot==0.1.0
- equinox==0.10.11
- etils==1.4.1
- executing==1.2.0
- flatbuffers==23.5.26
- flax==0.7.1
- fonttools==4.42.0
- gast==0.4.0
- gitdb==4.0.10
- gitpython==3.1.34
- google-auth==2.22.0
- google-auth-oauthlib==1.0.0
- google-pasta==0.2.0
- googleapis-common-protos==1.60.0
- grpcio==1.56.2
- h5py==3.9.0
- idna==3.4
- importlib-resources==6.0.0
- ipykernel==6.25.0
- ipython==8.14.0
- jax==0.4.14
- jaxlib==0.4.14+cuda12.cudnn89
- jaxopt==0.7
- jaxtyping==0.2.20
- jedi==0.19.0
- joblib==1.3.1
- jupyter-client==8.3.0
- jupyter-core==5.3.1
- keras==2.13.1
- kiwisolver==1.4.4
- libclang==16.0.6
- lineax==0.0.1
- llvmlite==0.40.1
- markdown==3.4.4
- markdown-it-py==3.0.0
- markupsafe==2.1.3
- matplotlib==3.7.2
- matplotlib-inline==0.1.6
- mdurl==0.1.2
- ml-dtypes==0.2.0
- msgpack==1.0.5
- multipledispatch==1.0.0
- natsort==8.4.0
- nest-asyncio==1.5.7
- networkx==3.1
- numba==0.57.1
- numpy==1.24.4
- numpyro==0.13.2
- opt-einsum==3.3.0
- optax==0.1.7
- orbax-checkpoint==0.3.2
- ott-jax==0.4.3.dev22+gf275dc4
- packaging==23.1
- pandas==2.0.3
- parso==0.8.3
- pathtools==0.1.2
- patsy==0.5.3
- pexpect==4.8.0
- pickleshare==0.7.5
- pillow==10.0.0
- platformdirs==3.10.0
- promise==2.3
- prompt-toolkit==3.0.39
- protobuf==4.23.4
- psutil==5.9.5
- ptyprocess==0.7.0
- pure-eval==0.2.2
- pyasn1==0.5.0
- pyasn1-modules==0.3.0
- pygments==2.15.1
- pynndescent==0.5.10
- pyparsing==3.0.9
- python-dateutil==2.8.2
- pytz==2023.3
- pyyaml==6.0.1
- pyzmq==25.1.0
- requests==2.31.0
- requests-oauthlib==1.3.1
- rich==13.5.2
- rsa==4.9
- scanpy==1.9.3
- scikit-learn==1.3.0
- scipy==1.11.1
- seaborn==0.12.2
- sentry-sdk==1.30.0
- session-info==1.0.0
- setproctitle==1.3.2
- six==1.16.0
- smmap==5.0.0
- stack-data==0.6.2
- statsmodels==0.14.0
- stdlib-list==0.9.0
- tensorboard==2.13.0
- tensorboard-data-server==0.7.1
- tensorflow==2.13.0
- tensorflow-datasets==4.9.2
- tensorflow-estimator==2.13.0
- tensorflow-io-gcs-filesystem==0.33.0
- tensorflow-metadata==1.13.1
- tensorstore==0.1.40
- termcolor==2.3.0
- threadpoolctl==3.2.0
- toml==0.10.2
- toolz==0.12.0
- tornado==6.3.2
- tqdm==4.65.0
- traitlets==5.9.0
- typeguard==4.1.0
- typing-extensions==4.7.1
- tzdata==2023.3
- umap-learn==0.5.3
- urllib3==1.26.16
- wandb==0.15.9
- wcwidth==0.2.6
- werkzeug==2.3.6
- wrapt==1.15.0
- zipp==3.16.2