README.org

Unsupervised lesion detection with multi view MRI and autoencoders

Running on GPU cluster using SLURM

Files

setup.sh

Is responsible to create an enviroment with the correct requirements without using GPUs.

run.sh

Is responsible to activate the previously created enviroment and run the python script using GPUs.

requirements.txt

Generated using pigar. Includes a list of dependencies for this project.. This file will get used, in the previously mentioned setup.sh, to install the required dependencies on the server.

Usage

Install dependencies on the remote server

sbatch setup.sh
tail -f setup.out

Run the deep neural network

sbatch run.sh
tail -f cAE_01.out

Resources

• gpu_ux_uis