Skip to content

Commit a08a4ea

Browse files
committed
updates: new figs, requirements.txt and environmental file added
1 parent 95ac98f commit a08a4ea

19 files changed

+5579
-1778
lines changed

Diff for: Figures/Code Availability Article Workflow.ai

+1,208
Large diffs are not rendered by default.

Diff for: Figures/Code Availability Article Workflow.png

170 KB
Loading

Diff for: Figures/fig1.png

-29.8 KB
Loading

Diff for: Figures/fig2.png

974 KB
Loading

Diff for: Figures/sup1.png

43 Bytes
Loading

Diff for: Figures/sup10.png

635 Bytes
Loading

Diff for: Figures/sup13.png

210 KB
Loading

Diff for: Figures/sup14.png

258 KB
Loading

Diff for: Figures/sup2.png

-227 Bytes
Loading

Diff for: Figures/sup3.png

3.32 KB
Loading

Diff for: Figures/sup4.png

175 Bytes
Loading

Diff for: Figures/sup5.png

177 Bytes
Loading

Diff for: Figures/sup6.png

373 Bytes
Loading

Diff for: Figures/sup7.png

105 Bytes
Loading

Diff for: Figures/sup8.png

28 KB
Loading

Diff for: Figures/sup9.png

149 Bytes
Loading

Diff for: dependencies/environment.yml

+82
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,82 @@
1+
name: code_availability_env
2+
channels:
3+
- conda-forge
4+
- defaults
5+
dependencies:
6+
- _libgcc_mutex=0.1=main
7+
- _openmp_mutex=5.1=1_gnu
8+
- asttokens=2.4.1=pyhd8ed1ab_0
9+
- backports=1.0=pyhd8ed1ab_3
10+
- backports.functools_lru_cache=1.6.5=pyhd8ed1ab_0
11+
- ca-certificates=2023.7.22=hbcca054_0
12+
- comm=0.1.4=pyhd8ed1ab_0
13+
- debugpy=1.6.7=py39h6a678d5_0
14+
- decorator=5.1.1=pyhd8ed1ab_0
15+
- entrypoints=0.4=pyhd8ed1ab_0
16+
- exceptiongroup=1.1.3=pyhd8ed1ab_0
17+
- executing=2.0.1=pyhd8ed1ab_0
18+
- ipykernel=6.26.0=pyhf8b6a83_0
19+
- ipython=8.17.2=pyh41d4057_0
20+
- jedi=0.19.1=pyhd8ed1ab_0
21+
- jupyter_client=7.3.4=pyhd8ed1ab_0
22+
- jupyter_core=5.5.0=py39hf3d152e_0
23+
- ld_impl_linux-64=2.38=h1181459_1
24+
- libffi=3.3=he6710b0_2
25+
- libgcc-ng=11.2.0=h1234567_1
26+
- libgomp=11.2.0=h1234567_1
27+
- libsodium=1.0.18=h36c2ea0_1
28+
- libstdcxx-ng=11.2.0=h1234567_1
29+
- matplotlib-inline=0.1.6=pyhd8ed1ab_0
30+
- ncurses=6.4=h6a678d5_0
31+
- nest-asyncio=1.5.8=pyhd8ed1ab_0
32+
- openssl=1.1.1l=h7f98852_0
33+
- packaging=23.2=pyhd8ed1ab_0
34+
- parso=0.8.3=pyhd8ed1ab_0
35+
- pexpect=4.8.0=pyh1a96a4e_2
36+
- pickleshare=0.7.5=py_1003
37+
- pip=23.3=py39h06a4308_0
38+
- platformdirs=3.11.0=pyhd8ed1ab_0
39+
- prompt-toolkit=3.0.39=pyha770c72_0
40+
- prompt_toolkit=3.0.39=hd8ed1ab_0
41+
- psutil=5.9.0=py39h5eee18b_0
42+
- ptyprocess=0.7.0=pyhd3deb0d_0
43+
- pure_eval=0.2.2=pyhd8ed1ab_0
44+
- pygments=2.16.1=pyhd8ed1ab_0
45+
- python=3.9.7=h12debd9_1
46+
- python-dateutil=2.8.2=pyhd8ed1ab_0
47+
- python_abi=3.9=2_cp39
48+
- pyzmq=25.1.0=py39h6a678d5_0
49+
- readline=8.2=h5eee18b_0
50+
- setuptools=68.0.0=py39h06a4308_0
51+
- six=1.16.0=pyh6c4a22f_0
52+
- sqlite=3.41.2=h5eee18b_0
53+
- stack_data=0.6.2=pyhd8ed1ab_0
54+
- tk=8.6.12=h1ccaba5_0
55+
- tornado=6.1=py39hb9d737c_3
56+
- traitlets=5.13.0=pyhd8ed1ab_0
57+
- typing-extensions=4.8.0=hd8ed1ab_0
58+
- typing_extensions=4.8.0=pyha770c72_0
59+
- tzdata=2023c=h04d1e81_0
60+
- wcwidth=0.2.9=pyhd8ed1ab_0
61+
- wheel=0.41.2=py39h06a4308_0
62+
- xz=5.4.2=h5eee18b_0
63+
- zeromq=4.3.4=h2531618_0
64+
- zlib=1.2.13=h5eee18b_0
65+
- pip:
66+
- contourpy==1.1.1
67+
- cycler==0.12.1
68+
- fonttools==4.43.1
69+
- importlib-resources==6.1.0
70+
- kiwisolver==1.4.5
71+
- matplotlib==3.8.1
72+
- matplotlib-venn==0.11.9
73+
- numpy==1.26.1
74+
- pandas==1.4.1
75+
- pillow==10.1.0
76+
- pyparsing==3.1.1
77+
- pysankey2==2.0.1
78+
- pytz==2023.3.post1
79+
- scipy==1.11.1
80+
- seaborn==0.13.0
81+
- zipp==3.17.0
82+
prefix: /home/curryofdoom/anaconda3/envs/code_availability_env

Diff for: dependencies/requirements.txt

+7
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,7 @@
1+
pandas==1.4.1
2+
scipy==1.11.1
3+
seaborn
4+
matplotlib
5+
numpy
6+
matplotlib-venn==0.11.9
7+
pySankey2==2.0.1

Diff for: notebooks/Figures.ipynb

+4,282-1,778
Large diffs are not rendered by default.

0 commit comments

Comments
 (0)