From e7d6e305f40f5e1abf91b5d52c570c771ba29905 Mon Sep 17 00:00:00 2001 From: MartinSchobben Date: Wed, 14 Sep 2022 07:55:15 +0200 Subject: [PATCH] let connection error in vignette --- .Rbuildignore | 2 + .gitignore | 5 +- renv.lock | 124 ++++++++++++++++++------------------ vignettes/oceanexplorer.Rmd | 2 +- 4 files changed, 66 insertions(+), 67 deletions(-) diff --git a/.Rbuildignore b/.Rbuildignore index c5306df..9ca263e 100644 --- a/.Rbuildignore +++ b/.Rbuildignore @@ -21,3 +21,5 @@ ^man/figures/oceanexplorer-demo\.gif$ ^tests/testthat/_snaps$ ^tests/testthat/apps$ +^Dockerfile$ +^test_debian.sh$ diff --git a/.gitignore b/.gitignore index 025480d..f9bbe4f 100644 --- a/.gitignore +++ b/.gitignore @@ -3,17 +3,16 @@ .Rhistory .RData .Ruserdata - # make sure not to commit the original NOAA files inst/**/*.rds tests/**/*.rds tests/**/*.svg tests/**/*.json tests/**/*.png - # pkgdown inst/doc docs - # shiny deploy rsconnect +test_debian.sh +Dockerfile diff --git a/renv.lock b/renv.lock index f555435..cd9f971 100644 --- a/renv.lock +++ b/renv.lock @@ -19,10 +19,10 @@ }, "DT": { "Package": "DT", - "Version": "0.24", + "Version": "0.25", "Source": "Repository", "Repository": "CRAN", - "Hash": "c814c35b0bc58613b4632c8acaf80b04", + "Hash": "d35337fd4278be35c50d7eeeec439f68", "Requirements": [ "crosstalk", "htmltools", @@ -51,10 +51,10 @@ }, "Matrix": { "Package": "Matrix", - "Version": "1.4-1", + "Version": "1.5-1", "Source": "Repository", "Repository": "CRAN", - "Hash": "699c47c606293bdfbc9fd78a93c9c8fe", + "Hash": "539dc0c0c05636812f1080f473d2c177", "Requirements": [ "lattice" ] @@ -182,10 +182,10 @@ }, "callr": { "Package": "callr", - "Version": "3.7.1", + "Version": "3.7.2", "Source": "Repository", "Repository": "CRAN", - "Hash": "2fda237f24bc56508f31394beaa56877", + "Hash": "358689cac9fe93b1bb3a19088d2dbed8", "Requirements": [ "R6", "processx" @@ -193,10 +193,10 @@ }, "cffr": { "Package": "cffr", - "Version": "0.2.2", + "Version": "0.2.3", "Source": "Repository", "Repository": "CRAN", - "Hash": "f5df64e83bac397c564f12917fdff30f", + "Hash": "875a4dd936ace801b71207d5236d79e3", "Requirements": [ "crayon", "desc", @@ -229,13 +229,11 @@ }, "cli": { "Package": "cli", - "Version": "3.3.0", + "Version": "3.4.0", "Source": "Repository", "Repository": "CRAN", - "Hash": "23abf173c2b783dcc43379ab9bba00ee", - "Requirements": [ - "glue" - ] + "Hash": "78003c09d258968a4d28107e779edb10", + "Requirements": [] }, "clipr": { "Package": "clipr", @@ -271,10 +269,10 @@ }, "covr": { "Package": "covr", - "Version": "3.5.1", + "Version": "3.6.1", "Source": "Repository", "Repository": "CRAN", - "Hash": "6d80a9fc3c0c8473153b54fa54719dfd", + "Hash": "a861cee34fbb4b107a73dd414ef56724", "Requirements": [ "crayon", "digest", @@ -348,10 +346,10 @@ }, "desc": { "Package": "desc", - "Version": "1.4.1", + "Version": "1.4.2", "Source": "Repository", "Repository": "CRAN", - "Hash": "eebd27ee58fcc58714eedb7aa07d8ad1", + "Hash": "6b9602c7ebbe87101a9c8edb6e8b6d21", "Requirements": [ "R6", "cli", @@ -438,10 +436,10 @@ }, "dplyr": { "Package": "dplyr", - "Version": "1.0.9", + "Version": "1.0.10", "Source": "Repository", "Repository": "CRAN", - "Hash": "f0bda1627a7f5d3f9a0b5add931596ac", + "Hash": "539412282059f7f0c07295723d23f987", "Requirements": [ "R6", "generics", @@ -537,10 +535,10 @@ }, "gert": { "Package": "gert", - "Version": "1.7.0", + "Version": "1.8.0", "Source": "Repository", "Repository": "CRAN", - "Hash": "e8432885a6c629a693c6e0716d1b68ec", + "Hash": "4bdd6588a3cbde071c7de6d07b66f1d3", "Requirements": [ "askpass", "credentials", @@ -571,10 +569,10 @@ }, "gh": { "Package": "gh", - "Version": "1.3.0", + "Version": "1.3.1", "Source": "Repository", "Repository": "CRAN", - "Hash": "38c2580abbda249bd6afeec00d14f531", + "Hash": "b6a12054ee13dce0f6696c019c10e539", "Requirements": [ "cli", "gitcreds", @@ -585,18 +583,18 @@ }, "gitcreds": { "Package": "gitcreds", - "Version": "0.1.1", + "Version": "0.1.2", "Source": "Repository", "Repository": "CRAN", - "Hash": "f3aefccc1cc50de6338146b62f115de8", + "Hash": "ab08ac61f3e1be454ae21911eb8bc2fe", "Requirements": [] }, "globals": { "Package": "globals", - "Version": "0.16.0", + "Version": "0.16.1", "Source": "Repository", "Repository": "CRAN", - "Hash": "2fb246aa501a4fa799448f3984b0c5c1", + "Hash": "e14798793892c6bebdbe2f144aacf6e6", "Requirements": [ "codetools" ] @@ -611,10 +609,10 @@ }, "gtable": { "Package": "gtable", - "Version": "0.3.0", + "Version": "0.3.1", "Source": "Repository", "Repository": "CRAN", - "Hash": "ac5c6baf7822ce8732b343f14c072c4d", + "Hash": "36b4265fb818f6a342bed217549cd896", "Requirements": [] }, "highr": { @@ -654,10 +652,10 @@ }, "httpuv": { "Package": "httpuv", - "Version": "1.6.5", + "Version": "1.6.6", "Source": "Repository", "Repository": "CRAN", - "Hash": "97fe71f0a4a1c9890e6c2128afa04bc0", + "Hash": "fd090e236ae2dc0f0cdf33a9ec83afb6", "Requirements": [ "R6", "Rcpp", @@ -667,10 +665,10 @@ }, "httr": { "Package": "httr", - "Version": "1.4.3", + "Version": "1.4.4", "Source": "Repository", "Repository": "CRAN", - "Hash": "88d1b310583777edf01ccd1216fb0b2b", + "Hash": "57557fac46471f0dbbf44705cc6a5c8c", "Requirements": [ "R6", "curl", @@ -681,10 +679,10 @@ }, "hunspell": { "Package": "hunspell", - "Version": "3.0.1", + "Version": "3.0.2", "Source": "Repository", "Repository": "CRAN", - "Hash": "3987784c19192ad0f2261c456d936df1", + "Hash": "656219b6f3f605499d7cdbe208656639", "Requirements": [ "Rcpp", "digest" @@ -736,10 +734,10 @@ }, "knitr": { "Package": "knitr", - "Version": "1.39", + "Version": "1.40", "Source": "Repository", "Repository": "CRAN", - "Hash": "029ab7c4badd3cf8af69016b2ba27493", + "Hash": "caea8b0f899a0b1738444b9bc47067e7", "Requirements": [ "evaluate", "highr", @@ -785,10 +783,10 @@ }, "lifecycle": { "Package": "lifecycle", - "Version": "1.0.1", + "Version": "1.0.2", "Source": "Repository", "Repository": "CRAN", - "Hash": "a6b6d352e3ed897373ab19d8395c98d0", + "Hash": "25f74670fa7d3277fe3ad8c1712a699f", "Requirements": [ "glue", "rlang" @@ -917,10 +915,10 @@ }, "pillar": { "Package": "pillar", - "Version": "1.8.0", + "Version": "1.8.1", "Source": "Repository", "Repository": "CRAN", - "Hash": "f95cf85794546c4ac2b9a6ca42e671ff", + "Hash": "f2316df30902c81729ae9de95ad5a608", "Requirements": [ "cli", "fansi", @@ -1185,18 +1183,18 @@ }, "rlang": { "Package": "rlang", - "Version": "1.0.4", + "Version": "1.0.5", "Source": "Repository", "Repository": "CRAN", - "Hash": "6539dd8c651e67e3b55b5ffea106362b", + "Hash": "971c3d698fc06dabdac6bc4bcda72dc4", "Requirements": [] }, "rmarkdown": { "Package": "rmarkdown", - "Version": "2.14", + "Version": "2.16", "Source": "Repository", "Repository": "CRAN", - "Hash": "31b60a882fabfabf6785b8599ffeb8ba", + "Hash": "0f3eaa1547e2c6880d4de1c043ac6826", "Requirements": [ "bslib", "evaluate", @@ -1244,18 +1242,18 @@ }, "rstudioapi": { "Package": "rstudioapi", - "Version": "0.13", + "Version": "0.14", "Source": "Repository", "Repository": "CRAN", - "Hash": "06c85365a03fdaf699966cc1d3cf53ea", + "Hash": "690bd2acc42a9166ce34845884459320", "Requirements": [] }, "rversions": { "Package": "rversions", - "Version": "2.1.1", + "Version": "2.1.2", "Source": "Repository", "Repository": "CRAN", - "Hash": "f88fab00907b312f8b23ec13e2d437cb", + "Hash": "a9881dfed103e83f9de151dc17002cd1", "Requirements": [ "curl", "xml2" @@ -1288,10 +1286,10 @@ }, "scales": { "Package": "scales", - "Version": "1.2.0", + "Version": "1.2.1", "Source": "Repository", "Repository": "CRAN", - "Hash": "6e8750cdd13477aa440d453da93d5cac", + "Hash": "906cb23d2f1c5680b8ce439b44c6fa63", "Requirements": [ "R6", "RColorBrewer", @@ -1466,10 +1464,10 @@ }, "stringr": { "Package": "stringr", - "Version": "1.4.0", + "Version": "1.4.1", "Source": "Repository", "Repository": "CRAN", - "Hash": "0759e6b6c0957edb1311028a49a35e76", + "Hash": "a66ad12140cd34d4f9dfcc19e84fc2a5", "Requirements": [ "glue", "magrittr", @@ -1566,10 +1564,10 @@ }, "tidyr": { "Package": "tidyr", - "Version": "1.2.0", + "Version": "1.2.1", "Source": "Repository", "Repository": "CRAN", - "Hash": "d8b95b7fee945d7da6888cf7eb71a49c", + "Hash": "cdb403db0de33ccd1b6f53b83736efa8", "Requirements": [ "cpp11", "dplyr", @@ -1600,10 +1598,10 @@ }, "tinytex": { "Package": "tinytex", - "Version": "0.40", + "Version": "0.41", "Source": "Repository", "Repository": "CRAN", - "Hash": "e7b654da5e77bc4e5435a966329cd25f", + "Hash": "6edfe5df6431a724b4254c0591e34ab3", "Requirements": [ "xfun" ] @@ -1697,10 +1695,10 @@ }, "viridisLite": { "Package": "viridisLite", - "Version": "0.4.0", + "Version": "0.4.1", "Source": "Repository", "Repository": "CRAN", - "Hash": "55e157e2aa88161bdb0754218470d204", + "Hash": "62f4b5da3e08d8e5bcba6cac15603f70", "Requirements": [] }, "waiter": { @@ -1775,10 +1773,10 @@ }, "xfun": { "Package": "xfun", - "Version": "0.32", + "Version": "0.33", "Source": "Repository", "Repository": "CRAN", - "Hash": "0498af3034691dde715dcd86198efe75", + "Hash": "1a666f915cd65072f4ccf5b2888d5d39", "Requirements": [] }, "xml2": { @@ -1817,10 +1815,10 @@ }, "zip": { "Package": "zip", - "Version": "2.2.0", + "Version": "2.2.1", "Source": "Repository", "Repository": "CRAN", - "Hash": "c7eef2996ac270a18c2715c997a727c5", + "Hash": "a7e91189fa51d9029a30eba3831ce53f", "Requirements": [] } } diff --git a/vignettes/oceanexplorer.Rmd b/vignettes/oceanexplorer.Rmd index 70dafde..71c0633 100644 --- a/vignettes/oceanexplorer.Rmd +++ b/vignettes/oceanexplorer.Rmd @@ -116,7 +116,7 @@ Imagine we are interested in phosphate concentrations in the month December from First, we extract the data by proving the variable, grid resolution, and the averaging period. Make sure to have an internet connection in order to connect to the NOAA server. -```{r setup, eval = curl::has_internet()} +```{r setup, eval = curl::has_internet(), error=TRUE} # load package library(oceanexplorer) # get data