gistfile1.txt

###########################################
############ Install docker ###############
###########################################
sudo apt-get update
sudo apt-get upgrade
sudo apt-get install ca-certificates curl gnupg lsb-release
sudo mkdir -p /etc/apt/keyrings
curl -fsSL https://download.docker.com/linux/ubuntu/gpg | sudo gpg --dearmor -o /etc/apt/keyrings/docker.gpg
echo \
  "deb [arch=$(dpkg --print-architecture) signed-by=/etc/apt/keyrings/docker.gpg] https://download.docker.com/linux/ubuntu \
  $(lsb_release -cs) stable" | sudo tee /etc/apt/sources.list.d/docker.list > /dev/null

sudo apt-get update
sudo apt-get install docker-ce docker-ce-cli containerd.io docker-compose-plugin -y
sudo groupadd docker
sudo usermod -aG docker $USER

LOGOUT and LOGIN...

docker run hello-world
sudo systemctl enable docker.service
sudo systemctl enable containerd.service

sudo apt-get install docker-compose -y


###########################################
######### Create docker-compose ###########
###########################################
# Use admin/pass as user/password credentials to login to openemr (from OE_USER and OE_PASS below)
# MYSQL_HOST and MYSQL_ROOT_PASS are required for openemr
# MYSQL_USER, MYSQL_PASS, OE_USER, MYSQL_PASS are optional for openemr and
#   if not provided, then default to openemr, openemr, admin, and pass respectively.
version: '3.1'
services:
  mysql:
    restart: always
    image: mariadb:10.6
    command: ['mysqld','--character-set-server=utf8mb4']
    volumes:
    - databasevolume:/var/lib/mysql
    ports:
    - 3306:3306
    environment:
      MYSQL_ROOT_PASSWORD: root
  openemr:
    restart: always
    image: openemr/openemr:7.0.0
    ports:
    - 80:80
    - 443:443
    volumes:
    - logvolume01:/var/log
    - sitevolume:/var/www/localhost/htdocs/openemr/sites
    #- /home/oemr/openemr-devops/docker/openemr/flex-edge/utilities/:/root/
    environment:
      MYSQL_HOST: mysql
      MYSQL_ROOT_PASS: root
      MYSQL_USER: openemr
      MYSQL_PASS: openemr
      OE_USER: admin
      OE_PASS: pass
    depends_on:
    - mysql
volumes:
  logvolume01: {}
  sitevolume: {}
  databasevolume: {}

###########################################
###### If you have access to volumes ######
###########################################
sudo apt-get install p7zip-full -y
wget <downloadlink>?download=1
mv <longfilename> 3-volumes.7z
7z x 3-volumes.7z

###########################################
##### docker volumes correct restored #####
###########################################

docker volume create oemr_databasevolume
docker volume create oemr_sitevolume
docker volume create oemr_logvolume01

sudo su
cd /var/lib/docker/volumes/
cp -r /home/oemr/oemr_databasevolume oemr_databasevolume
cp -r /home/oemr/oemr_logvolume01/ oemr_logvolume01
cp -r /home/oemr/oemr_sitevolume/ oemr_sitevolume

chown -Rf oemr:root oemr_databasevolume/_data/
chown -Rf oemr:root oemr_logvolume01/_data/
chown -Rf oemr:root oemr_sitevolume/_data/

exit

REMEMBER TO CHANGE THE DOCKER COMPOSE to point to these volume locations
nano docker-compose.yml

volumes:
  oemr_databasevolume:
    external: true
    
  oemr_logvolume01:
    external: true
    
  oemr_sitevolume:
    external: true

###########################################
######### Clone devops repo ###############
###########################################

git clone https://github.com/openemr/openemr-devops
chmod +x openemr-devops/docker/openemr/flex-edge/utilities/devtools
chmod +x openemr-devops/docker/openemr/flex-edge/utilities/devtoolsLibrary.source

mkdir ~/bin
curl -L https://raw.githubusercontent.com/openemr/openemr-devops/master/utilities/openemr-cmd/openemr-cmd > ~/bin/openemr-cmd
curl -L https://raw.githubusercontent.com/openemr/openemr-devops/master/utilities/openemr-cmd/openemr-cmd-h > ~/bin/openemr-cmd-h

chmod +x ~/bin/openemr-cmd
chmod +x ~/bin/openemr-cmd-h

LOGOUT and LOGIN back again

###########################################
######### Generate patients correctly #####
###########################################
nano openemr-devops/docker/openemr/flex-edge/utilities/devtoolsLibrary.source

Change text in:
java -jar synthea-with-dependencies.jar --exporter.fhir.export false --exporter.ccda.export true --generate.only_alive_patients true --generate.append_numbers_to_person_names false --exporter.clinical_note.export true -p "$1"


docker-compose up
Ctrl + C
docker-compose up -d

###########################################
########## Adding codesets ################
###########################################

UPLOAD FILES TO CORRECT LOCATION: /home/oemr/openemr-devops/docker/openemr/flex-edge/utilities/

docker exec -i d234d01cb0f0 sh -c "mv /root/RxNorm_full_01032023.zip /var/www/localhost/htdocs/openemr/contrib/rxnorm/RxNorm_full_01032023.zip"
docker exec -i d234d01cb0f0 sh -c "mv /root/SnomedCT_USEditionRF2_PRODUCTION_20220901T120000Z.zip /var/www/localhost/htdocs/openemr/contrib/snomed/SnomedCT_USEditionRF2_PRODUCTION_20220901T120000Z.zip"
docker exec -i d234d01cb0f0 sh -c "mv /root/ep_ec_only_cms_20190510.xml.zip /var/www/localhost/htdocs/openemr/contrib/snomed/ep_ec_only_cms_20190510.xml.zip"

###########################################
########## Generate patients ##############
###########################################
openemr-cmd irp 100 true