xios build CI

Author: mo-marqh

.github/workflows/buildTest.yml

@@ -0,0 +1,34 @@
+name: build-test-XIOS
+
+on: [push, pull_request]
+
+jobs:
+  build_test:
+    name: build XIOS and run tests
+    runs-on: ubuntu-latest
+    steps:
+      # Check out repository branch
+      - uses: actions/checkout@v4
+      - name: Install dependencies
+        run: |
+            sudo apt update
+            sudo apt -yq install subversion
+            sudo apt -yq install $(<dependencies)
+      - name: clone and build XIOS
+        run: |
+          svn co http://forge.ipsl.jussieu.fr/ioserver/svn/XIOS2/trunk XIOS2
+          cp arch/* XIOS2/arch/
+          cd XIOS2
+          ./make_xios --job 2 --arch GCC_LINUX_APT
+          ls -l lib/
+          ls -l inc/
+          ls -l bin/
+          cd ..
+      - name: run generic
+        run: |
+          cd XIOS2/generic_testcase
+          ln -s ../bin/generic_testcase.exe
+          ln -s ../bin/xios_server.exe
+          sed -i 's/nb_proc_atm=4/nb_proc_atm=1/g' param.def
+          mpiexec -n 1 ./generic_testcase.exe : -n 1 ./xios_server.exe
+          cd ../..

arch/arch-GCC_LINUX_APT.env

@@ -0,0 +1,10 @@
+export HDF5_INC_DIR=/usr/lib/x86_64-linux-gnu/hdf5/openmpi/include
+export HDF5_LIB_DIR=/usr/lib/x86_64-linux-gnu/hdf5/openmpi/lib
+
+export NETCDF_INC_DIR=/usr/lib/x86_64-linux-gnu/netcdf/mpi/include:/usr/include/
+export NETCDF_LIB_DIR=/usr/lib/x86_64-linux-gnu/netcdf/mpi/lib:/usr/lib/x86_64-linux-gnu
+
+export BOOST_INC_DIR=/usr/include/boost
+export BOOST_LIB_DIR=/usr/lib/x86_64-linux-gnu
+
+

arch/arch-GCC_LINUX_APT.fcm

@@ -0,0 +1,24 @@
+################################################################################
+###################                Projet XIOS               ###################
+################################################################################
+
+%CCOMPILER      mpicc
+%FCOMPILER      mpif90
+%LINKER         mpif90  
+
+%BASE_CFLAGS    -w -std=c++11 -D__XIOS_EXCEPTION
+%PROD_CFLAGS    -O3 -DBOOST_DISABLE_ASSERTS
+%DEV_CFLAGS     -g -O2 
+%DEBUG_CFLAGS   -g 
+
+%BASE_FFLAGS    -D__NONE__ -ffree-line-length-none
+%PROD_FFLAGS    -O3
+%DEV_FFLAGS     -g -O2
+%DEBUG_FFLAGS   -g 
+
+%BASE_INC       -D__NONE__
+%BASE_LD        -lstdc++
+
+%CPP            cpp
+%FPP            cpp -P
+%MAKE           gmake

arch/arch-GCC_LINUX_APT.path

@@ -0,0 +1,25 @@
+NETCDF_INCDIR=""
+IFS=':' read -r -a array <<< "$NETCDF_INC_DIR"
+for element in "${array[@]}"; do NETCDF_INCDIR+="-I$element "; done
+NETCDF_LIBDIR=""
+IFS=':' read -r -a array <<< "$NETCDF_LIB_DIR"
+for element in "${array[@]}"; do NETCDF_LIBDIR+="-L$element "; done
+NETCDF_LIB="-lnetcdff -lnetcdf"
+export NETCDF_INCDIR
+export NETCDF_LIBDIR
+
+MPI_INCDIR=""
+MPI_LIBDIR=""
+MPI_LIB="-lcurl"
+
+HDF5_INCDIR="-I $HDF5_INC_DIR"
+HDF5_LIBDIR="-L $HDF5_LIB_DIR"
+HDF5_LIB="-lhdf5_hl -lhdf5 -lhdf5 -lz"
+
+BOOST_INCDIR="-I $BOOST_INC_DIR"
+BOOST_LIBDIR="-L $BOOST_LIB_DIR"
+BOOST_LIB=""
+
+OASIS_INCDIR="-I$PWD/../../oasis3-mct/BLD/build/lib/psmile.MPI1"
+OASIS_LIBDIR="-L$PWD/../../oasis3-mct/BLD/lib"
+OASIS_LIB="-lpsmile.MPI1 -lscrip -lmct -lmpeu"

dependencies

@@ -0,0 +1,8 @@
+g++
+libboost-mpi1.74-dev
+libhdf5-openmpi-dev
+libnetcdff-dev
+libnetcdf-mpi-dev
+libnetcdff-dev
+libpnetcdf-dev
+netcdf-bin

desktopEnv

@@ -0,0 +1,15 @@
+module purge
+module unuse /project/ukmo/rhel7/R/modulefiles; module unuse /project/ukmo/rhel7/fortran/opt/gfortran/modulefiles
+module use /project/extrasoftware/modulefiles.rhel7
+module use /data/users/lfric/software/modulefiles.rhel7
+
+module load environment/lfric/gcc
+
+export NETCDF_LIB_DIR=$NETCDF_4_8_1_ROOT/lib:$NETCDF_4_8_1_ROOT/lib64
+export NETCDF_INC_DIR=$NETCDF_4_8_1_ROOT/include
+
+. arch/arch-GCC_LINUX_APT.path
+
+export XIOS_INCDIR=$XIOS_R2252_2_ROOT/include
+export XIOS_LIBDIR=$XIOS_R2252_2_ROOT/lib
+export XIOS_BINDIR=$XIOS_R2252_2_ROOT/bin